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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0001233 through 18771 annotations produced 1 hits

Enhancer of seven in absentia 2 (Hsp83):

Annotation Number : CG1242
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001233
Gbrowse : chr3L:3193026-3197061 (+) // 100.0 //
Probeset : 1630688_at
Accessions : protein= NP_523899;, nucleotide= NM_079175;
Pathway : embryo // traceable author statement /// 0009408 // response to heat // inferred from sequence or structural similarity
Interpro : sleep // inferred from mutant phenotype /// 0045187 // regulation of circadian sleep/wake cycle
FlyMine data for FBgn0001233.
BDGP gene expression has embryonic in situ data for Hsp83: 53 pix of staining in 29 body parts.
BioGrid reports that CG1242 interacts with CG13570 CG12491 CG12811 CG13423 CG14207 CG14235 CG15308 CG16833 CG1709 CG17158 CG17568 CG2720 CG3189 CG31999 CG3225 CG32635 CG3335 CG3903 CG6830 CG8316 CG1689 CG9949 CG9949 CG1389 .
TRiP has 2 RNAi stocks for FBgn0001233 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001233 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1766 474 of 4 0.60Down
Head1756 764 of 4 0.60Down
Eye1792 1734 of 4 0.61Down
Thoracicoabdominal ganglion2208 564 of 4 0.80Down
Salivary gland1485 884 of 4 0.51Down
Crop3089 1134 of 4 1.10None
Midgut1818 564 of 4 0.60Down
Tubule4250 7284 of 4 1.50None
Hindgut2051 394 of 4 0.70Down
Heart3065 1804 of 4 1.05None
Fat body3303 5914 of 4 1.13None
Ovary3271 294 of 4 1.10Up
Testis2515 654 of 4 0.90Down
Male accessory glands3173 314 of 4 1.10None
Virgin spermatheca1799 1704 of 4 0.61Down
Mated spermatheca2875 2114 of 4 0.98None
Adult carcass2892 714 of 4 1.00None
Larval CNS2608 1374 of 4 0.89Down
Larval Salivary gland5239 1714 of 4 1.79Up
Larval midgut3399 1614 of 4 1.16None
Larval tubule2612 1054 of 4 0.90None
Larval hindgut3313 3034 of 4 1.13None
Larval fat body2772 1844 of 4 0.90None
Larval trachea3004 6124 of 4 1.03None
Larval carcass3650 2854 of 4 1.25None
S2 cells (growing)2273 924 of 4 0.78Down
Whole fly2930 864 of 4

Looking for FBgn0001233. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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