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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001235 through 18771 annotations produced 2 hits



dorsotonals (hth):

Annotation Number : CG17117
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001235
Gbrowse : chr3R:6408186-6464386 (-) // 100.0 //
Probeset : 1632177_at
Accessions : protein= NP_001014613; /// NP_001027170; /// NP_001163581; /// NP_001163582; /// NP_476576; /// NP_476577; /// NP_476578; /// NP_731486;, nucleotide= NM_001014613; /// NM_001031999; /// NM_001170110; /// NM_001170111; /// NM_057228; /// NM_057229; /// NM_057230; /// NM_169348;
Pathway : translocation // inferred from mutant phenotype /// 0001654 // eye development // inferred from mutant phenotype /// 00
Interpro : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
FlyMine data for FBgn0001235.
BioGrid reports that CG17117 interacts with CG4057 CG8933 CG17785 CG1954 CG2830 CG2903 CG4835 CG5053 CG10325 CG10325 CG1028 CG1028 CG1028 CG17894 CG9015 CG3938 CG1030 CG1030 CG1030 CG10388 CG10388 CG1374 CG1374 Dmel CG14425 .
TRiP has 2 RNAi stocks for FBgn0001235 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001235 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain342 44 of 410.30Up
Head115 54 of 4 3.50Up
Eye73 34 of 4 2.20Up
Thoracicoabdominal ganglion437 514 of 413.10Up
Salivary gland24 62 of 4 0.72None
Crop358 104 of 410.80Up
Midgut35 24 of 4 1.10None
Tubule84 184 of 4 2.50Up
Hindgut6 10 of 4 0.20Down
Heart29 14 of 4 0.88None
Fat body17 24 of 4 0.52Down
Ovary3 10 of 4 0.10Down
Testis4 10 of 4 0.10Down
Male accessory glands9 20 of 4 0.30Down
Virgin spermatheca38 54 of 4 1.14None
Mated spermatheca62 44 of 4 1.86Up
Adult carcass50 104 of 4 1.50None
Larval CNS230 84 of 4 6.93Up
Larval Salivary gland8 10 of 4 0.26Down
Larval midgut77 74 of 4 2.31Up
Larval tubule296 194 of 4 8.90Up
Larval hindgut56 54 of 4 1.69Up
Larval fat body28 34 of 4 0.90None
Larval trachea198 124 of 4 5.97Up
Larval carcass157 204 of 4 4.73Up
S2 cells (growing)1 00 of 4 0.04Down
Whole fly33 34 of 4



dorsotonals (hth):

Annotation Number : CG17117
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001235
Gbrowse : chr3R:6335561-6439973 (-) // 100.0 //
Probeset : 1631524_a_at
Accessions : protein= NP_001014613; /// NP_001027170; /// NP_001163581; /// NP_001163582; /// NP_476576; /// NP_476577; /// NP_476578; /// NP_731486;, nucleotide= NM_001014613; /// NM_001031999; /// NM_001170110; /// NM_001170111; /// NM_057228; /// NM_057229; /// NM_057230; /// NM_169348;
Pathway : translocation // inferred from mutant phenotype /// 0001654 // eye development // inferred from mutant phenotype /// 00
Interpro : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
FlyMine data for FBgn0001235.
BioGrid reports that CG17117 interacts with CG4057 CG8933 CG17785 CG1954 CG2830 CG2903 CG4835 CG5053 CG10325 CG10325 CG1028 CG1028 CG1028 CG17894 CG9015 CG3938 CG1030 CG1030 CG1030 CG10388 CG10388 CG1374 CG1374 Dmel CG14425 .
TRiP has 2 RNAi stocks for FBgn0001235 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001235 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 24 of 4 1.10None
Head127 54 of 4 3.80Up
Eye31 34 of 4 0.93None
Thoracicoabdominal ganglion62 34 of 4 1.90Up
Salivary gland12 21 of 4 0.37Down
Crop188 34 of 4 5.60Up
Midgut22 14 of 4 0.70Down
Tubule152 394 of 4 4.50Up
Hindgut5 03 of 4 0.20Down
Heart19 24 of 4 0.57Down
Fat body9 14 of 4 0.29Down
Ovary1 00 of 4 0.00Down
Testis1 01 of 4 0.00Down
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca97 84 of 4 2.90Up
Mated spermatheca125 134 of 4 3.74Up
Adult carcass67 44 of 4 2.00Up
Larval CNS99 104 of 4 2.97Up
Larval Salivary gland8 23 of 4 0.25Down
Larval midgut83 34 of 4 2.48Up
Larval tubule187 144 of 4 5.60Up
Larval hindgut43 14 of 4 1.31Up
Larval fat body25 24 of 4 0.80Down
Larval trachea142 104 of 4 4.25Up
Larval carcass153 124 of 4 4.58Up
S2 cells (growing)3 01 of 4 0.09Down
Whole fly33 24 of 4

Looking for FBgn0001235. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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