FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0001235 through 18771 annotations produced 2 hits

dorsotonals (hth):

Annotation Number : CG17117
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001235
Gbrowse : chr3R:6335561-6439973 (-) // 100.0 //
Probeset : 1631524_a_at
Accessions : protein= NP_001014613; /// NP_001027170; /// NP_001163581; /// NP_001163582; /// NP_476576; /// NP_476577; /// NP_476578; /// NP_731486;, nucleotide= NM_001014613; /// NM_001031999; /// NM_001170110; /// NM_001170111; /// NM_057228; /// NM_057229; /// NM_057230; /// NM_169348;
Pathway : translocation // inferred from mutant phenotype /// 0001654 // eye development // inferred from mutant phenotype /// 00
Interpro : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
FlyMine data for FBgn0001235.
BioGrid reports that CG17117 interacts with CG4057 CG8933 CG17785 CG1954 CG2830 CG2903 CG4835 CG5053 CG10325 CG10325 CG1028 CG1028 CG1028 CG17894 CG9015 CG3938 CG1030 CG1030 CG1030 CG10388 CG10388 CG1374 CG1374 Dmel CG14425 .
TRiP has 2 RNAi stocks for FBgn0001235 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001235 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	38 ± 2	4 of 4	1.10	None
Head	127 ± 5	4 of 4	3.80	Up
Eye	31 ± 3	4 of 4	0.93	None
Thoracicoabdominal ganglion	62 ± 3	4 of 4	1.90	Up
Salivary gland	12 ± 2	1 of 4	0.37	Down
Crop	188 ± 3	4 of 4	5.60	Up
Midgut	22 ± 1	4 of 4	0.70	Down
Tubule	152 ± 39	4 of 4	4.50	Up
Hindgut	5 ± 0	3 of 4	0.20	Down
Heart	19 ± 2	4 of 4	0.57	Down
Fat body	9 ± 1	4 of 4	0.29	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	1 ± 0	1 of 4	0.00	Down
Male accessory glands	3 ± 1	0 of 4	0.10	Down
Virgin spermatheca	97 ± 8	4 of 4	2.90	Up
Mated spermatheca	125 ± 13	4 of 4	3.74	Up
Adult carcass	67 ± 4	4 of 4	2.00	Up
Larval CNS	99 ± 10	4 of 4	2.97	Up
Larval Salivary gland	8 ± 2	3 of 4	0.25	Down
Larval midgut	83 ± 3	4 of 4	2.48	Up
Larval tubule	187 ± 14	4 of 4	5.60	Up
Larval hindgut	43 ± 1	4 of 4	1.31	Up
Larval fat body	25 ± 2	4 of 4	0.80	Down
Larval trachea	142 ± 10	4 of 4	4.25	Up
Larval carcass	153 ± 12	4 of 4	4.58	Up
S2 cells (growing)	3 ± 0	1 of 4	0.09	Down
Whole fly	33 ± 2	4 of 4

dorsotonals (hth):

Annotation Number : CG17117
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001235
Gbrowse : chr3R:6408186-6464386 (-) // 100.0 //
Probeset : 1632177_at
Accessions : protein= NP_001014613; /// NP_001027170; /// NP_001163581; /// NP_001163582; /// NP_476576; /// NP_476577; /// NP_476578; /// NP_731486;, nucleotide= NM_001014613; /// NM_001031999; /// NM_001170110; /// NM_001170111; /// NM_057228; /// NM_057229; /// NM_057230; /// NM_169348;
Pathway : translocation // inferred from mutant phenotype /// 0001654 // eye development // inferred from mutant phenotype /// 00
Interpro : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
FlyMine data for FBgn0001235.
BioGrid reports that CG17117 interacts with CG4057 CG8933 CG17785 CG1954 CG2830 CG2903 CG4835 CG5053 CG10325 CG10325 CG1028 CG1028 CG1028 CG17894 CG9015 CG3938 CG1030 CG1030 CG1030 CG10388 CG10388 CG1374 CG1374 Dmel CG14425 .
TRiP has 2 RNAi stocks for FBgn0001235 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001235 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	342 ± 4	4 of 4	10.30	Up
Head	115 ± 5	4 of 4	3.50	Up
Eye	73 ± 3	4 of 4	2.20	Up
Thoracicoabdominal ganglion	437 ± 51	4 of 4	13.10	Up
Salivary gland	24 ± 6	2 of 4	0.72	None
Crop	358 ± 10	4 of 4	10.80	Up
Midgut	35 ± 2	4 of 4	1.10	None
Tubule	84 ± 18	4 of 4	2.50	Up
Hindgut	6 ± 1	0 of 4	0.20	Down
Heart	29 ± 1	4 of 4	0.88	None
Fat body	17 ± 2	4 of 4	0.52	Down
Ovary	3 ± 1	0 of 4	0.10	Down
Testis	4 ± 1	0 of 4	0.10	Down
Male accessory glands	9 ± 2	0 of 4	0.30	Down
Virgin spermatheca	38 ± 5	4 of 4	1.14	None
Mated spermatheca	62 ± 4	4 of 4	1.86	Up
Adult carcass	50 ± 10	4 of 4	1.50	None
Larval CNS	230 ± 8	4 of 4	6.93	Up
Larval Salivary gland	8 ± 1	0 of 4	0.26	Down
Larval midgut	77 ± 7	4 of 4	2.31	Up
Larval tubule	296 ± 19	4 of 4	8.90	Up
Larval hindgut	56 ± 5	4 of 4	1.69	Up
Larval fat body	28 ± 3	4 of 4	0.90	None
Larval trachea	198 ± 12	4 of 4	5.97	Up
Larval carcass	157 ± 20	4 of 4	4.73	Up
S2 cells (growing)	1 ± 0	0 of 4	0.04	Down
Whole fly	33 ± 3	4 of 4

Looking for FBgn0001235. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720