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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001256 through 18771 annotations produced 1 hits



Ecdysone-inducible gene L1 (ImpL1):

Annotation Number : CG10717
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001256
Gbrowse : chr3L:13375866-13377101 (+) // 100.0 //
Probeset : 1640837_a_at
Accessions : protein= NP_001163439; /// NP_524058; /// NP_729885;, nucleotide= NM_001169968; /// NM_079334; /// NM_168541;
Pathway : 0005576 // extracellular region // non-traceable author statement
FlyMine data for FBgn0001256.
BDGP gene expression has embryonic in situ data for ImpL1: 25 pix of staining in 12 body parts.
VDRC has 1 RNAi stocks for FBgn0001256 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00None
Head16 40 of 4 0.30None
Eye67 34 of 4 1.37None
Thoracicoabdominal ganglion4 10 of 4 0.10None
Salivary gland6 20 of 4 0.14None
Crop7 30 of 4 0.20None
Midgut20 10 of 4 0.40None
Tubule4 10 of 4 0.10Down
Hindgut12 30 of 4 0.30None
Heart1 00 of 4 0.04None
Fat body5 70 of 4 0.12None
Ovary1 00 of 4 0.00None
Testis1 00 of 4 0.00None
Male accessory glands4 00 of 4 0.10None
Virgin spermatheca4 10 of 4 0.08None
Mated spermatheca2 00 of 4 0.04None
Adult carcass4 10 of 4 0.10None
Larval CNS4 40 of 4 0.09None
Larval Salivary gland18 50 of 4 0.37None
Larval midgut13 30 of 4 0.27None
Larval tubule11 20 of 4 0.20None
Larval hindgut15 10 of 4 0.32None
Larval fat body1 00 of 4 0.00None
Larval trachea7 40 of 4 0.16None
Larval carcass7 10 of 4 0.16None
S2 cells (growing)8 30 of 4 0.17None
Whole fly49 150 of 4

Looking for FBgn0001256. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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