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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001257 through 18771 annotations produced 1 hits



Ecdysone-inducible gene L2 (ImpL2):

Annotation Number : CG15009
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001257
Gbrowse : chr3L:4224709-4236147 (-) // 99.07 //
Probeset : 1636202_s_at
Accessions : protein= NP_523921; /// NP_728960; /// NP_728961;, nucleotide= NM_079197; /// NM_168069; /// NM_168070;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
FlyMine data for FBgn0001257.
BDGP gene expression has embryonic in situ data for ImpL2: 17 pix of staining in 13 body parts.
VDRC has 3 RNAi stocks for FBgn0001257 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain421 204 of 4 0.90None
Head512 264 of 4 1.00None
Eye265 44 of 4 0.54Down
Thoracicoabdominal ganglion963 804 of 4 2.00Up
Salivary gland28 90 of 4 0.06Down
Crop60 74 of 4 0.10Down
Midgut249 334 of 4 0.50Down
Tubule606 694 of 4 1.20None
Hindgut381 274 of 4 0.80None
Heart2027 2044 of 4 4.13Up
Fat body1106 2844 of 4 2.25Up
Ovary190 174 of 4 0.40Down
Testis49 14 of 4 0.10Down
Male accessory glands16 40 of 4 0.00Down
Virgin spermatheca113 94 of 4 0.23Down
Mated spermatheca144 164 of 4 0.29Down
Adult carcass1099 424 of 4 2.20Up
Larval CNS414 374 of 4 0.84None
Larval Salivary gland42 63 of 4 0.09Down
Larval midgut499 664 of 4 1.02None
Larval tubule249 294 of 4 0.50Down
Larval hindgut683 654 of 4 1.39None
Larval fat body951 564 of 4 1.90Up
Larval trachea268 824 of 4 0.55Down
Larval carcass1868 1854 of 4 3.80Up
S2 cells (growing)3121 1234 of 4 6.35Up
Whole fly491 544 of 4

Looking for FBgn0001257. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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