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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001259 through 18771 annotations produced 1 hits



inturned (in):

Annotation Number : CG16993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001259
Gbrowse : chr3L:20360299-20363362 (+) // 100.0 //
Probeset : 1639275_at
Accessions : protein= NP_788548;, nucleotide= NM_176370;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0001259.
BDGP gene expression has embryonic in situ data for in: 22 pix of staining in 6 body parts.
BioGrid reports that CG16993 interacts with CG18361 CG17697 CG17697 CG8075 CG11084 CG11084 CG11895 CG11895 .
VDRC has 3 RNAi stocks for FBgn0001259 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20None
Head11 ± 14 of 4 2.80Up
Eye4 ± 10 of 4 1.02None
Thoracicoabdominal ganglion2 ± 10 of 4 0.60None
Salivary gland6 ± 40 of 4 1.43None
Crop11 ± 12 of 4 2.70Up
Midgut6 ± 10 of 4 1.50None
Tubule1 ± 00 of 4 0.30Down
Hindgut9 ± 14 of 4 2.30Up
Heart3 ± 00 of 4 0.91None
Fat body4 ± 10 of 4 1.08None
Ovary0 ± 00 of 4 0.20None
Testis3 ± 10 of 4 0.90None
Male accessory glands3 ± 10 of 4 0.70None
Virgin spermatheca5 ± 01 of 4 1.20None
Mated spermatheca3 ± 10 of 4 0.85None
Adult carcass11 ± 10 of 4 2.80Up
Larval CNS9 ± 33 of 4 2.22None
Larval Salivary gland4 ± 20 of 4 1.01None
Larval midgut6 ± 20 of 4 1.42None
Larval tubule1 ± 00 of 4 0.40None
Larval hindgut7 ± 02 of 4 1.82None
Larval fat body3 ± 10 of 4 0.90None
Larval trachea40 ± 44 of 4 9.69Up
Larval carcass19 ± 34 of 4 4.53Up
S2 cells (growing)0 ± 00 of 4 0.18None
Whole fly4 ± 10 of 4

Looking for FBgn0001259. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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