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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001276 through 18771 annotations produced 1 hits



Mediator complex subunit 29 (ix):

Annotation Number : CG13201
Flybase ID : FBgn0001276
Gbrowse : chr2R:7247023-7247590 (-) // 100.0 //
Probeset : 1639714_at
Accessions : protein= NP_610677;, nucleotide= NM_136833;
Pathway : DNA-dependent // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from direct assay
FlyMine data for FBgn0001276.
BioGrid reports that CG13201 interacts with CG13214 CG4623 CG5057 CG5466 CG11094 CG11094 .
TRiP has 1 RNAi stocks for FBgn0001276 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001276 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 24 of 4 1.30Up
Head44 24 of 4 0.80Down
Eye51 34 of 4 0.93None
Thoracicoabdominal ganglion59 44 of 4 1.10None
Salivary gland54 62 of 4 0.97None
Crop40 34 of 4 0.70Down
Midgut39 34 of 4 0.70Down
Tubule36 14 of 4 0.60Down
Hindgut38 14 of 4 0.70Down
Heart35 14 of 4 0.64Down
Fat body37 54 of 4 0.68Down
Ovary98 44 of 4 1.80Up
Testis7 10 of 4 0.10Down
Male accessory glands52 34 of 4 0.90None
Virgin spermatheca51 34 of 4 0.92None
Mated spermatheca51 34 of 4 0.92None
Adult carcass41 23 of 4 0.70Down
Larval CNS96 34 of 4 1.74Up
Larval Salivary gland58 44 of 4 1.05None
Larval midgut40 44 of 4 0.73Down
Larval tubule52 14 of 4 0.90None
Larval hindgut49 64 of 4 0.88None
Larval fat body54 73 of 4 1.00None
Larval trachea53 54 of 4 0.96None
Larval carcass38 34 of 4 0.69Down
S2 cells (growing)68 24 of 4 1.23Up
Whole fly55 24 of 4

Looking for FBgn0001276. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime