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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0001291 through 18771 annotations produced 1 hits

Jun oncogene (Jra):

Annotation Number : CG2275
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001291
Gbrowse : chr2R:5983984-5986110 (+) // 100.0 //
Probeset : 1635224_s_at
Accessions : protein= NP_476586; /// NP_724882;, nucleotide= NM_057238; /// NM_165739;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : engulfment // inferred from mutant phenotype /// 0007254 // JNK cascade // inferred from genetic interaction /// 000725
FlyMine data for FBgn0001291.
BioGrid reports that CG2275 interacts with CG2275 CG2913 CG4898 CG5694 CG3166 CG5680 CG5680 CG5680 CG5680 CG18361 CG8049 CG10079 CG2248 CG2248 CG9375 CG7873 CG18492 CG1945 CG4353 CG33197 CG16973 CG16973 CG7892 CG12212 CG2845 CG10108 CG17077 CG17077 CG1857 CG12437 CG12559 CG12559 CG18085 CG18085 CG18247 CG2272 CG14026 CG7850 Dmel CG33956 Dmel CG33956 .
TRiP has 1 RNAi stocks for FBgn0001291 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001291 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain145 64 of 4 0.90None
Head160 54 of 4 1.00None
Eye161 24 of 4 0.97None
Thoracicoabdominal ganglion184 04 of 4 1.10None
Salivary gland173 94 of 4 1.05None
Crop339 84 of 4 2.10Up
Midgut230 74 of 4 1.40Up
Tubule416 814 of 4 2.50Up
Hindgut255 74 of 4 1.50Up
Heart147 244 of 4 0.89None
Fat body94 154 of 4 0.57Down
Ovary283 24 of 4 1.70Up
Testis139 34 of 4 0.80None
Male accessory glands137 54 of 4 0.80None
Virgin spermatheca133 64 of 4 0.81Down
Mated spermatheca146 44 of 4 0.89None
Adult carcass140 44 of 4 0.80None
Larval CNS118 74 of 4 0.71Down
Larval Salivary gland228 74 of 4 1.38Up
Larval midgut250 124 of 4 1.52Up
Larval tubule357 104 of 4 2.20Up
Larval hindgut243 104 of 4 1.47Up
Larval fat body167 44 of 4 1.00None
Larval trachea293 524 of 4 1.77Up
Larval carcass231 174 of 4 1.40Up
S2 cells (growing)389 204 of 4 2.35Up
Whole fly165 94 of 4

Looking for FBgn0001291. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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