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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001297 through 18771 annotations produced 2 hits



chr3R:25598700-25619838 (+) // 100.0 // (kayak):

Annotation Number : CG15509
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640886_a_at
Accessions : protein= , nucleotide= NP_001027577; /// NP_001027578; /// NP_001027579; /// NP_001027580;
Pathway : "0001736 // establishment of planar polarity // non-traceable author statement /// 0006350 // transcription // inferred
Interpro : DNA-dependent // inferred from electronic annotation /// 0007254 // JNK cascade // non-traceable author statement /// 0
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain211 154 of 4 0.80None
Head297 224 of 4 1.20None
Eye85 34 of 4 0.33Down
Thoracicoabdominal ganglion214 34 of 4 0.80None
Salivary gland115 94 of 4 0.45Down
Crop554 284 of 4 2.20Up
Midgut346 244 of 4 1.40Up
Tubule324 424 of 4 1.30None
Hindgut385 114 of 4 1.50Up
Heart218 274 of 4 0.85None
Fat body166 194 of 4 0.65Down
Ovary77 24 of 4 0.30Down
Testis44 84 of 4 0.20Down
Male accessory glands139 44 of 4 0.50Down
Virgin spermatheca192 104 of 4 0.75None
Mated spermatheca219 174 of 4 0.86None
Adult carcass487 384 of 4 1.90Up
Larval CNS229 404 of 4 0.90None
Larval Salivary gland248 394 of 4 0.97None
Larval midgut353 314 of 4 1.38None
Larval tubule123 84 of 4 0.50Down
Larval hindgut692 504 of 4 2.70Up
Larval fat body105 94 of 4 0.40Down
Larval trachea252 354 of 4 0.99None
Larval carcass679 604 of 4 2.65Up
S2 cells (growing)909 734 of 4 3.55Up
Whole fly256 264 of 4



kayak (kay):

Annotation Number : CG15507
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001297
Gbrowse : chr3R:25592706-25593339 (+) // 100.0 //
Probeset : 1636185_at
Accessions : protein= NP_001027577; /// NP_001027578; /// NP_001027579; /// NP_001027580;, nucleotide= NM_001032405; /// NM_001032406; /// NM_001032407; /// NM_001032408;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007254 // JNK cascade // non-traceable author statement /// 0
Interpro : thorax closure // inferred from mutant phenotype /// 0046529 // imaginal disc fusion
FlyMine data for FBgn0001297.
BDGP gene expression has embryonic in situ data for kay: 42 pix of staining in 9 body parts.
TRiP has 4 RNAi stocks for FBgn0001297 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001297 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 11 of 4 1.30None
Head4 11 of 4 0.90None
Eye2 00 of 4 0.55None
Thoracicoabdominal ganglion4 10 of 4 0.90None
Salivary gland3 10 of 4 0.89None
Crop8 11 of 4 1.90None
Midgut4 20 of 4 1.10None
Tubule3 10 of 4 0.90None
Hindgut4 00 of 4 1.00None
Heart3 11 of 4 0.80None
Fat body9 31 of 4 2.28Up
Ovary0 00 of 4 0.20Down
Testis3 10 of 4 0.90None
Male accessory glands5 20 of 4 1.20None
Virgin spermatheca2 00 of 4 0.58None
Mated spermatheca5 00 of 4 1.22None
Adult carcass6 20 of 4 1.50None
Larval CNS5 11 of 4 1.17None
Larval Salivary gland5 20 of 4 1.36None
Larval midgut3 00 of 4 0.71None
Larval tubule1 10 of 4 0.40None
Larval hindgut5 10 of 4 1.16None
Larval fat body1 00 of 4 0.40Down
Larval trachea4 21 of 4 1.01None
Larval carcass4 10 of 4 1.03None
S2 cells (growing)27 14 of 4 6.34Up
Whole fly4 00 of 4

Looking for FBgn0001297. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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