FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0001297 through 18771 annotations produced 2 hits

chr3R:25598700-25619838 (+) // 100.0 // (kayak):

Annotation Number : CG15509
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640886_a_at
Accessions : protein= , nucleotide= NP_001027577; /// NP_001027578; /// NP_001027579; /// NP_001027580;
Pathway : "0001736 // establishment of planar polarity // non-traceable author statement /// 0006350 // transcription // inferred
Interpro : DNA-dependent // inferred from electronic annotation /// 0007254 // JNK cascade // non-traceable author statement /// 0
FlyMine data for full length.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	211 ± 15	4 of 4	0.80	None
Head	297 ± 22	4 of 4	1.20	None
Eye	85 ± 3	4 of 4	0.33	Down
Thoracicoabdominal ganglion	214 ± 3	4 of 4	0.80	None
Salivary gland	115 ± 9	4 of 4	0.45	Down
Crop	554 ± 28	4 of 4	2.20	Up
Midgut	346 ± 24	4 of 4	1.40	Up
Tubule	324 ± 42	4 of 4	1.30	None
Hindgut	385 ± 11	4 of 4	1.50	Up
Heart	218 ± 27	4 of 4	0.85	None
Fat body	166 ± 19	4 of 4	0.65	Down
Ovary	77 ± 2	4 of 4	0.30	Down
Testis	44 ± 8	4 of 4	0.20	Down
Male accessory glands	139 ± 4	4 of 4	0.50	Down
Virgin spermatheca	192 ± 10	4 of 4	0.75	None
Mated spermatheca	219 ± 17	4 of 4	0.86	None
Adult carcass	487 ± 38	4 of 4	1.90	Up
Larval CNS	229 ± 40	4 of 4	0.90	None
Larval Salivary gland	248 ± 39	4 of 4	0.97	None
Larval midgut	353 ± 31	4 of 4	1.38	None
Larval tubule	123 ± 8	4 of 4	0.50	Down
Larval hindgut	692 ± 50	4 of 4	2.70	Up
Larval fat body	105 ± 9	4 of 4	0.40	Down
Larval trachea	252 ± 35	4 of 4	0.99	None
Larval carcass	679 ± 60	4 of 4	2.65	Up
S2 cells (growing)	909 ± 73	4 of 4	3.55	Up
Whole fly	256 ± 26	4 of 4

kayak (kay):

Annotation Number : CG15507
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001297
Gbrowse : chr3R:25592706-25593339 (+) // 100.0 //
Probeset : 1636185_at
Accessions : protein= NP_001027577; /// NP_001027578; /// NP_001027579; /// NP_001027580;, nucleotide= NM_001032405; /// NM_001032406; /// NM_001032407; /// NM_001032408;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007254 // JNK cascade // non-traceable author statement /// 0
Interpro : thorax closure // inferred from mutant phenotype /// 0046529 // imaginal disc fusion
FlyMine data for FBgn0001297.
BDGP gene expression has embryonic in situ data for kay: 42 pix of staining in 9 body parts.
TRiP has 4 RNAi stocks for FBgn0001297 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001297 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	1 of 4	1.30	None
Head	4 ± 1	1 of 4	0.90	None
Eye	2 ± 0	0 of 4	0.55	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.90	None
Salivary gland	3 ± 1	0 of 4	0.89	None
Crop	8 ± 1	1 of 4	1.90	None
Midgut	4 ± 2	0 of 4	1.10	None
Tubule	3 ± 1	0 of 4	0.90	None
Hindgut	4 ± 0	0 of 4	1.00	None
Heart	3 ± 1	1 of 4	0.80	None
Fat body	9 ± 3	1 of 4	2.28	Up
Ovary	0 ± 0	0 of 4	0.20	Down
Testis	3 ± 1	0 of 4	0.90	None
Male accessory glands	5 ± 2	0 of 4	1.20	None
Virgin spermatheca	2 ± 0	0 of 4	0.58	None
Mated spermatheca	5 ± 0	0 of 4	1.22	None
Adult carcass	6 ± 2	0 of 4	1.50	None
Larval CNS	5 ± 1	1 of 4	1.17	None
Larval Salivary gland	5 ± 2	0 of 4	1.36	None
Larval midgut	3 ± 0	0 of 4	0.71	None
Larval tubule	1 ± 1	0 of 4	0.40	None
Larval hindgut	5 ± 1	0 of 4	1.16	None
Larval fat body	1 ± 0	0 of 4	0.40	Down
Larval trachea	4 ± 2	1 of 4	1.01	None
Larval carcass	4 ± 1	0 of 4	1.03	None
S2 cells (growing)	27 ± 1	4 of 4	6.34	Up
Whole fly	4 ± 0	0 of 4

Looking for FBgn0001297. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720