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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001301 through 18771 annotations produced 1 hits



chr2L:18129329-18138210 (-) // 100.0 // (Kelch):

Annotation Number : CG7210
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632448_s_at
Accessions : protein= , nucleotide= NP_476589; /// NP_724095;
Pathway : "0007275 // multicellular organismal development // inferred from electronic annotation /// 0007297 // ovarian follicle
Interpro : nurse cell to oocyte // non-traceable author statement /// 0007349 // cellularization // inferred from mutant phenotype
FlyMine data for full length.
Homophila reports that CG7210 is a close match (2e-53) to human gene GAN;GAN1 (NP_071324), a gene associated with Giant axonal neuropathy-1, 256850 (3).
BioGrid reports that CG7210 interacts with CG8548 CG8642 CG9028 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 ± 274 of 4 6.20Up
Head185 ± 194 of 4 6.30Up
Eye145 ± 104 of 4 4.96Up
Thoracicoabdominal ganglion355 ± 434 of 412.10Up
Salivary gland17 ± 22 of 4 0.61None
Crop69 ± 54 of 4 2.40Up
Midgut22 ± 23 of 4 0.80None
Tubule17 ± 32 of 4 0.60Down
Hindgut22 ± 13 of 4 0.80None
Heart32 ± 14 of 4 1.10None
Fat body36 ± 44 of 4 1.25None
Ovary5 ± 00 of 4 0.20Down
Testis6 ± 11 of 4 0.20Down
Male accessory glands6 ± 20 of 4 0.20Down
Virgin spermatheca8 ± 10 of 4 0.27Down
Mated spermatheca8 ± 10 of 4 0.30Down
Adult carcass55 ± 44 of 4 1.90Up
Larval CNS170 ± 244 of 4 5.80Up
Larval Salivary gland7 ± 20 of 4 0.24Down
Larval midgut10 ± 10 of 4 0.35Down
Larval tubule11 ± 10 of 4 0.40Down
Larval hindgut14 ± 03 of 4 0.48None
Larval fat body14 ± 32 of 4 0.50None
Larval trachea143 ± 294 of 4 4.87Up
Larval carcass17 ± 23 of 4 0.61None
S2 cells (growing)12 ± 03 of 4 0.41None
Whole fly29 ± 54 of 4

Looking for FBgn0001301. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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