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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001316 through 18771 annotations produced 1 hits



klarsicht (klar):

Annotation Number : CG17046
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001316
Gbrowse : chr3L:434257-540589 (-) // 100.0 //
Probeset : 1628155_at
Accessions : protein= NP_001036576; /// NP_001097462; /// NP_001097463; /// NP_523873;, nucleotide= NM_001043111; /// NM_001103992; /// NM_001103993; /// NM_079149;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035239 // tube morphogenesis // inferred from mutant phenot
Interpro : 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 000
FlyMine data for FBgn0001316.
BioGrid reports that CG17046 interacts with CG9669 CG32158 CG5466 CG18816 CG30160 CG9768 CG9057 .
TRiP has 2 RNAi stocks for FBgn0001316 available for purchase.
VDRC has 1 RNAi stocks for FBgn0001316 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain262 64 of 4 1.40Up
Head188 104 of 4 1.00None
Eye307 274 of 4 1.66Up
Thoracicoabdominal ganglion269 54 of 4 1.50Up
Salivary gland149 84 of 4 0.81Down
Crop274 84 of 4 1.50Up
Midgut384 104 of 4 2.10Up
Tubule205 84 of 4 1.10Up
Hindgut341 104 of 4 1.80Up
Heart251 204 of 4 1.36Up
Fat body176 174 of 4 0.95None
Ovary232 124 of 4 1.30Up
Testis99 74 of 4 0.50Down
Male accessory glands151 44 of 4 0.80Down
Virgin spermatheca253 184 of 4 1.37Up
Mated spermatheca271 184 of 4 1.47Up
Adult carcass217 84 of 4 1.20Up
Larval CNS649 874 of 4 3.51Up
Larval Salivary gland200 264 of 4 1.08None
Larval midgut372 74 of 4 2.02Up
Larval tubule209 64 of 4 1.10None
Larval hindgut352 174 of 4 1.91Up
Larval fat body139 74 of 4 0.80Down
Larval trachea477 374 of 4 2.58Up
Larval carcass309 94 of 4 1.67Up
S2 cells (growing)412 124 of 4 2.23Up
Whole fly185 84 of 4

Looking for FBgn0001316. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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