Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001320 through 18771 annotations produced 1 hits



chr3L:20685429-20688463 (-) // 100.0 // (radius incompletus):

Annotation Number : CG4717
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1629097_at
Accessions : protein= , nucleotide= NP_524187;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 00063
Interpro : DNA-dependent // inferred from electronic annotation /// 0007088 // regulation of mitosis // inferred from mutant pheno
FlyMine data for full length.
Homophila reports that CG4717 is a close match (9e-11) to human gene NOT;NR4A2;NURR1;TINUR (NP_775265), a gene associated with {Parkinson disease}, 168600 (3).
BioGrid reports that CG4717 interacts with CG7583 CG7725 CG7856 CG9786 CG10079 CG4761 CG10718 CG6464 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.30Down
Head54 24 of 4 3.10Up
Eye5 00 of 4 0.33Down
Thoracicoabdominal ganglion5 21 of 4 0.30Down
Salivary gland11 50 of 4 0.65None
Crop402 244 of 422.70Up
Midgut6 20 of 4 0.40Down
Tubule4 00 of 4 0.30Down
Hindgut165 74 of 4 9.30Up
Heart7 12 of 4 0.44Down
Fat body9 11 of 4 0.55Down
Ovary1 00 of 4 0.10Down
Testis11 14 of 4 0.60Down
Male accessory glands4 20 of 4 0.30Down
Virgin spermatheca4 10 of 4 0.26Down
Mated spermatheca3 10 of 4 0.20Down
Adult carcass33 34 of 4 1.90Up
Larval CNS5 11 of 4 0.30Down
Larval Salivary gland4 20 of 4 0.25Down
Larval midgut12 31 of 4 0.68None
Larval tubule3 10 of 4 0.20Down
Larval hindgut68 34 of 4 3.83Up
Larval fat body2 00 of 4 0.10Down
Larval trachea158 344 of 4 8.93Up
Larval carcass19 24 of 4 1.09None
S2 cells (growing)0 00 of 4 0.04Down
Whole fly17 14 of 4

Looking for FBgn0001320. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime