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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001323 through 18771 annotations produced 1 hits



knirps-related (knrl):

Annotation Number : CG4761
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001323
Gbrowse : chr3L:20590240-20613636 (-) // 100.0 //
Probeset : 1626059_at
Accessions : protein= NP_788552;, nucleotide= NM_176374;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007088 // regulation of mitosis // inferred from mutant pheno
Interpro : open tracheal system // traceable author statement /// 0035151 // regulation of tube size
FlyMine data for FBgn0001323.
BDGP gene expression has embryonic in situ data for knrl: 101 pix of staining in 31 body parts.
Homophila reports that CG4761 is a close match (3e-11) to human gene NOT;NR4A2;NURR1;TINUR (NP_775264), a gene associated with {Parkinson disease}, 168600 (3).
BioGrid reports that CG4761 interacts with CG7583 CG9653 CG4717 CG1857 CG7850 Dmel CG33956 .
TRiP has 1 RNAi stocks for FBgn0001323 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001323 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 01 of 4 0.20Down
Head40 14 of 4 2.40Up
Eye5 12 of 4 0.33Down
Thoracicoabdominal ganglion4 01 of 4 0.30Down
Salivary gland7 21 of 4 0.46Down
Crop551 164 of 433.00Up
Midgut7 14 of 4 0.40Down
Tubule4 01 of 4 0.30Down
Hindgut184 34 of 411.00Up
Heart5 13 of 4 0.33Down
Fat body11 14 of 4 0.70None
Ovary1 00 of 4 0.10Down
Testis0 00 of 4 0.10Down
Male accessory glands4 10 of 4 0.30Down
Virgin spermatheca3 12 of 4 0.20Down
Mated spermatheca5 02 of 4 0.32Down
Adult carcass33 44 of 4 2.00Up
Larval CNS2 13 of 4 0.18Down
Larval Salivary gland2 01 of 4 0.15Down
Larval midgut4 02 of 4 0.29Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut54 44 of 4 3.23Up
Larval fat body3 11 of 4 0.20Down
Larval trachea73 154 of 4 4.40Up
Larval carcass22 24 of 4 1.35None
S2 cells (growing)1 00 of 4 0.06Down
Whole fly16 24 of 4

Looking for FBgn0001323. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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