FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0001325 through 18771 annotations produced 1 hits

chr2R:21114137-21117053 (+) // 99.84 // (Kruppel):

Annotation Number : CG3340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1629753_at
Accessions : protein= , nucleotide= NP_523867;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 00063
Interpro : embryo // non-traceable author statement /// 0007354 // zygotic determination of anterior/posterior axis
FlyMine data for full length.
Homophila reports that CG3340 is a close match (6e-12) to human gene SIP1;SMADIP1;ZEB2;ZFHX1B (NP_055610), a gene associated with Mowat-Wilson syndrome, 235730 (3).
BioGrid reports that CG3340 interacts with CG7583 CG9885 CG8127 CG8127 CG1007 CG1007 CG9786 CG1469 CG8938 CG18783 CG8103 CG8103 CG6601 CG4385 CG10849 CG10849 CG4700 CG17369 CG17369 CG5461 CG11282 CG11282 CG11282 CG11282 CG11282 CG11282 CG14938 CG2922 CG4114 CG7467 CG7467 CG7467 CG9750 CG1921 CG1921 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 1	4 of 4	2.60	Up
Head	4 ± 1	3 of 4	0.70	None
Eye	3 ± 1	1 of 4	0.49	None
Thoracicoabdominal ganglion	19 ± 3	4 of 4	3.00	Up
Salivary gland	14 ± 4	1 of 4	2.32	None
Crop	5 ± 1	2 of 4	0.90	None
Midgut	1 ± 0	0 of 4	0.20	None
Tubule	3 ± 0	0 of 4	0.60	Down
Hindgut	4 ± 0	0 of 4	0.70	None
Heart	4 ± 1	1 of 4	0.65	None
Fat body	11 ± 1	4 of 4	1.86	None
Ovary	1 ± 0	0 of 4	0.30	None
Testis	3 ± 0	3 of 4	0.60	None
Male accessory glands	6 ± 2	1 of 4	1.10	None
Virgin spermatheca	5 ± 1	2 of 4	0.92	None
Mated spermatheca	5 ± 0	2 of 4	0.91	None
Adult carcass	5 ± 3	0 of 4	0.80	None
Larval CNS	42 ± 10	4 of 4	6.70	Up
Larval Salivary gland	13 ± 1	4 of 4	2.17	None
Larval midgut	1 ± 0	0 of 4	0.26	None
Larval tubule	5 ± 1	2 of 4	0.90	None
Larval hindgut	11 ± 4	3 of 4	1.80	None
Larval fat body	668 ± 26	4 of 4	105.30	Up
Larval trachea	5 ± 3	2 of 4	0.88	None
Larval carcass	8 ± 2	4 of 4	1.32	None
S2 cells (growing)	0 ± 0	0 of 4	0.14	None
Whole fly	6 ± 2	2 of 4

Looking for FBgn0001325. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720