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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001491 through 18771 annotations produced 1 hits



lethal(1)10Bb (l(1)10Bb):

Annotation Number : CG1639
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001491
Gbrowse : chrX:11218330-11219332 (-) // 100.0 //
Probeset : 1639060_at
Accessions : protein= NP_511117;, nucleotide= NM_078562;
Pathway : via spliceosome // inferred by curator"
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
FlyMine data for FBgn0001491.
BDGP gene expression has embryonic in situ data for l(1)10Bb: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0001491 available for purchase.
VDRC has 1 RNAi stocks for FBgn0001491 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain246 ± 54 of 4 0.70Down
Head238 ± 164 of 4 0.70Down
Eye148 ± 74 of 4 0.45Down
Thoracicoabdominal ganglion237 ± 74 of 4 0.70Down
Salivary gland196 ± 64 of 4 0.59Down
Crop163 ± 124 of 4 0.50Down
Midgut139 ± 64 of 4 0.40Down
Tubule237 ± 214 of 4 0.70Down
Hindgut169 ± 54 of 4 0.50Down
Heart211 ± 34 of 4 0.64Down
Fat body234 ± 54 of 4 0.71Down
Ovary444 ± 94 of 4 1.30Up
Testis383 ± 114 of 4 1.20None
Male accessory glands160 ± 84 of 4 0.50Down
Virgin spermatheca472 ± 54 of 4 1.42Up
Mated spermatheca504 ± 234 of 4 1.52Up
Adult carcass155 ± 84 of 4 0.50Down
Larval CNS350 ± 454 of 4 1.06None
Larval Salivary gland226 ± 94 of 4 0.68Down
Larval midgut112 ± 34 of 4 0.34Down
Larval tubule189 ± 64 of 4 0.60Down
Larval hindgut165 ± 24 of 4 0.50Down
Larval fat body277 ± 204 of 4 0.80None
Larval trachea191 ± 254 of 4 0.58Down
Larval carcass150 ± 94 of 4 0.45Down
S2 cells (growing)202 ± 44 of 4 0.61Down
Whole fly331 ± 254 of 4

Looking for FBgn0001491. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime