FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0001565 through 18771 annotations produced 1 hits

RNA helicase gene (Hlc):

Annotation Number : CG1666
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001565
Gbrowse : chrX:21256541-21258967 (-) // 100.0 //
Probeset : 1638310_at
Accessions : protein= NP_523434;, nucleotide= NM_078710;
Interpro : "0003676 // nucleic acid binding // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activi
FlyMine data for FBgn0001565.
TRiP has 2 RNAi stocks for FBgn0001565 available for purchase.
VDRC has 4 RNAi stocks for FBgn0001565 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	384 ± 11	4 of 4	1.00	None
Head	378 ± 14	4 of 4	1.00	None
Eye	785 ± 23	4 of 4	2.11	Up
Thoracicoabdominal ganglion	395 ± 14	4 of 4	1.10	None
Salivary gland	451 ± 43	4 of 4	1.21	None
Crop	501 ± 3	4 of 4	1.30	Up
Midgut	215 ± 9	4 of 4	0.60	Down
Tubule	359 ± 10	4 of 4	1.00	None
Hindgut	545 ± 8	4 of 4	1.50	Up
Heart	627 ± 27	4 of 4	1.68	Up
Fat body	384 ± 40	4 of 4	1.03	None
Ovary	481 ± 11	4 of 4	1.30	Up
Testis	31 ± 1	4 of 4	0.10	Down
Male accessory glands	606 ± 30	4 of 4	1.60	Up
Virgin spermatheca	415 ± 9	4 of 4	1.11	None
Mated spermatheca	410 ± 34	4 of 4	1.10	None
Adult carcass	364 ± 4	4 of 4	1.00	None
Larval CNS	277 ± 7	4 of 4	0.75	Down
Larval Salivary gland	222 ± 19	4 of 4	0.60	Down
Larval midgut	185 ± 13	4 of 4	0.50	Down
Larval tubule	458 ± 21	4 of 4	1.20	Up
Larval hindgut	350 ± 17	4 of 4	0.94	None
Larval fat body	167 ± 25	4 of 4	0.50	Down
Larval trachea	526 ± 90	4 of 4	1.41	Up
Larval carcass	308 ± 43	4 of 4	0.83	None
S2 cells (growing)	770 ± 7	4 of 4	2.07	Up
Whole fly	372 ± 16	4 of 4

Looking for FBgn0001565. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720