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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001612 through 18771 annotations produced 1 hits



gamma-tubulin ring protein 91 (l(1)dd4):

Annotation Number : CG10988
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001612
Gbrowse : chrX:13630599-13638688 (-) // 100.0 //
Probeset : 1636052_at
Accessions : protein= NP_524919;, nucleotide= NM_080180;
Pathway : 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic anno
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from seq
FlyMine data for FBgn0001612.
BDGP gene expression has embryonic in situ data for l(1)dd4: 11 pix of staining in 10 body parts.
BioGrid reports that CG10988 interacts with CG9850 CG11271 CG3157 CG3917 .
TRiP has 1 RNAi stocks for FBgn0001612 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001612 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 ± 74 of 4 1.00None
Head69 ± 54 of 4 0.50Down
Eye90 ± 64 of 4 0.65Down
Thoracicoabdominal ganglion142 ± 34 of 4 1.00None
Salivary gland32 ± 23 of 4 0.23Down
Crop69 ± 44 of 4 0.50Down
Midgut25 ± 14 of 4 0.20Down
Tubule57 ± 04 of 4 0.40Down
Hindgut56 ± 34 of 4 0.40Down
Heart34 ± 04 of 4 0.25Down
Fat body28 ± 24 of 4 0.21Down
Ovary266 ± 34 of 4 1.90Up
Testis67 ± 24 of 4 0.50Down
Male accessory glands56 ± 34 of 4 0.40Down
Virgin spermatheca26 ± 24 of 4 0.19Down
Mated spermatheca30 ± 04 of 4 0.22Down
Adult carcass46 ± 14 of 4 0.30Down
Larval CNS226 ± 104 of 4 1.63Up
Larval Salivary gland53 ± 34 of 4 0.39Down
Larval midgut38 ± 34 of 4 0.28Down
Larval tubule53 ± 24 of 4 0.40Down
Larval hindgut97 ± 54 of 4 0.70Down
Larval fat body269 ± 364 of 4 1.90Up
Larval trachea93 ± 134 of 4 0.67Down
Larval carcass60 ± 24 of 4 0.44Down
S2 cells (growing)209 ± 64 of 4 1.51Up
Whole fly138 ± 44 of 4

Looking for FBgn0001612. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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