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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001624 through 18771 annotations produced 4 hits



Discslarge (dlg1):

Annotation Number : CG1725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001624
Gbrowse : chrX:11269795-11296894 (+) // 99.3 //
Probeset : 1640119_a_at
Accessions : protein= NP_001096955; /// NP_001096956; /// NP_001162718; /// NP_001162719; /// NP_001162720; /// NP_511120; /// NP_727518; /// NP_727519; /// NP_727520; /// NP_996402; /// NP_996403; /// NP_996404; /// NP_996405; /// NP_996406; /// NP_996407;, nucleotide= NM_001103485; /// NM_001103486; /// NM_001169247; /// NM_001169248; /// NM_001169249; /// NM_078565; /// NM_167280; /// NM_167281; /// NM_167282; /// NM_206679; /// NM_206680; /// NM_206681; /// NM_206682; /// NM_206683; /// NM_206684;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : 0004385 // guanylate kinase activity // traceable author statement /// 0004871 // signal transducer activity // inferred
FlyMine data for FBgn0001624.
Homophila reports that CG1725 is a close match (1e-13) to human gene TJP2;ZO2 (NP_004808), a gene associated with Hypercholanemia, familial, 607748 (3).
BioGrid reports that CG1725 interacts with CG5410 CG17666 CG17826 CG30387 CG4761 CG8301 CG9572 CG9665 CG9986 CG11579 CG5055 CG6383 CG6383 CG12348 CG5462 .
TRiP has 11 RNAi stocks for FBgn0001624 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001624 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 44 of 4 1.20None
Head198 ± 154 of 4 6.30Up
Eye925 ± 814 of 429.65Up
Thoracicoabdominal ganglion12 ± 22 of 4 0.40Down
Salivary gland18 ± 21 of 4 0.58Down
Crop16 ± 20 of 4 0.50Down
Midgut7 ± 00 of 4 0.20Down
Tubule3 ± 00 of 4 0.10Down
Hindgut10 ± 11 of 4 0.30Down
Heart9 ± 31 of 4 0.30Down
Fat body8 ± 20 of 4 0.26Down
Ovary8 ± 01 of 4 0.30Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands12 ± 12 of 4 0.40Down
Virgin spermatheca3 ± 10 of 4 0.10Down
Mated spermatheca5 ± 10 of 4 0.17Down
Adult carcass31 ± 34 of 4 1.00None
Larval CNS7 ± 01 of 4 0.22Down
Larval Salivary gland8 ± 00 of 4 0.29Down
Larval midgut6 ± 10 of 4 0.21Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut5 ± 00 of 4 0.18Down
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea18 ± 191 of 4 0.59None
Larval carcass4 ± 20 of 4 0.15Down
S2 cells (growing)25 ± 24 of 4 0.81None
Whole fly31 ± 14 of 4



Discslarge (dlg1):

Annotation Number : CG1725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001624
Gbrowse : chrX:11283726-11301780 (+) // 100.0 //
Probeset : 1624021_a_at
Accessions : protein= NP_001096955; /// NP_001096956; /// NP_001162718; /// NP_001162719; /// NP_001162720; /// NP_511120; /// NP_727518; /// NP_727519; /// NP_727520; /// NP_996402; /// NP_996403; /// NP_996404; /// NP_996405; /// NP_996406; /// NP_996407;, nucleotide= NM_001103485; /// NM_001103486; /// NM_001169247; /// NM_001169248; /// NM_001169249; /// NM_078565; /// NM_167280; /// NM_167281; /// NM_167282; /// NM_206679; /// NM_206680; /// NM_206681; /// NM_206682; /// NM_206683; /// NM_206684;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : 0004385 // guanylate kinase activity // traceable author statement /// 0004871 // signal transducer activity // inferred
FlyMine data for FBgn0001624.
Homophila reports that CG1725 is a close match (1e-13) to human gene TJP2;ZO2 (NP_004808), a gene associated with Hypercholanemia, familial, 607748 (3).
BioGrid reports that CG1725 interacts with CG5410 CG17666 CG17826 CG30387 CG4761 CG8301 CG9572 CG9665 CG9986 CG11579 CG5055 CG6383 CG6383 CG12348 CG5462 .
TRiP has 11 RNAi stocks for FBgn0001624 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001624 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain367 ± 74 of 4 3.30Up
Head120 ± 164 of 4 1.10None
Eye246 ± 134 of 4 2.24Up
Thoracicoabdominal ganglion214 ± 244 of 4 2.00Up
Salivary gland107 ± 64 of 4 0.97None
Crop330 ± 134 of 4 3.00Up
Midgut57 ± 44 of 4 0.50Down
Tubule69 ± 24 of 4 0.60Down
Hindgut296 ± 94 of 4 2.70Up
Heart334 ± 114 of 4 3.04Up
Fat body118 ± 134 of 4 1.08None
Ovary221 ± 74 of 4 2.00Up
Testis42 ± 24 of 4 0.40Down
Male accessory glands114 ± 54 of 4 1.00None
Virgin spermatheca63 ± 44 of 4 0.58Down
Mated spermatheca71 ± 54 of 4 0.65Down
Adult carcass173 ± 114 of 4 1.60Up
Larval CNS202 ± 194 of 4 1.84Up
Larval Salivary gland123 ± 74 of 4 1.13None
Larval midgut40 ± 24 of 4 0.36Down
Larval tubule81 ± 24 of 4 0.70Down
Larval hindgut153 ± 134 of 4 1.39Up
Larval fat body82 ± 104 of 4 0.70None
Larval trachea225 ± 124 of 4 2.05Up
Larval carcass246 ± 174 of 4 2.24Up
S2 cells (growing)192 ± 64 of 4 1.75Up
Whole fly110 ± 44 of 4



Discslarge (dlg1):

Annotation Number : CG1725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001624
Gbrowse : chrX:11263669-11283324 (+) // 100.0 //
Probeset : 1627882_at
Accessions : protein= NP_001096955; /// NP_001096956; /// NP_001162718; /// NP_001162719; /// NP_001162720; /// NP_511120; /// NP_727518; /// NP_727519; /// NP_727520; /// NP_996402; /// NP_996403; /// NP_996404; /// NP_996405; /// NP_996406; /// NP_996407;, nucleotide= NM_001103485; /// NM_001103486; /// NM_001169247; /// NM_001169248; /// NM_001169249; /// NM_078565; /// NM_167280; /// NM_167281; /// NM_167282; /// NM_206679; /// NM_206680; /// NM_206681; /// NM_206682; /// NM_206683; /// NM_206684;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : 0004385 // guanylate kinase activity // traceable author statement /// 0004871 // signal transducer activity // inferred
FlyMine data for FBgn0001624.
Homophila reports that CG1725 is a close match (1e-13) to human gene TJP2;ZO2 (NP_004808), a gene associated with Hypercholanemia, familial, 607748 (3).
BioGrid reports that CG1725 interacts with CG5410 CG17666 CG17826 CG30387 CG4761 CG8301 CG9572 CG9665 CG9986 CG11579 CG5055 CG6383 CG6383 CG12348 CG5462 .
TRiP has 11 RNAi stocks for FBgn0001624 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001624 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 13 of 4 0.40Down
Head11 ± 04 of 4 0.60None
Eye20 ± 24 of 4 1.13None
Thoracicoabdominal ganglion8 ± 21 of 4 0.50Down
Salivary gland17 ± 40 of 4 0.97None
Crop10 ± 14 of 4 0.60Down
Midgut6 ± 10 of 4 0.40Down
Tubule7 ± 01 of 4 0.40Down
Hindgut5 ± 10 of 4 0.30Down
Heart5 ± 11 of 4 0.31Down
Fat body8 ± 32 of 4 0.47Down
Ovary31 ± 14 of 4 1.70Up
Testis4 ± 11 of 4 0.20Down
Male accessory glands10 ± 31 of 4 0.60None
Virgin spermatheca9 ± 12 of 4 0.49Down
Mated spermatheca9 ± 30 of 4 0.54None
Adult carcass7 ± 00 of 4 0.40Down
Larval CNS8 ± 14 of 4 0.49Down
Larval Salivary gland9 ± 11 of 4 0.53Down
Larval midgut6 ± 10 of 4 0.35Down
Larval tubule5 ± 11 of 4 0.30Down
Larval hindgut8 ± 13 of 4 0.46Down
Larval fat body15 ± 21 of 4 0.80None
Larval trachea7 ± 22 of 4 0.40Down
Larval carcass6 ± 00 of 4 0.36Down
S2 cells (growing)14 ± 14 of 4 0.77None
Whole fly18 ± 24 of 4



Discslarge (dlg1):

Annotation Number : CG1725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001624
Gbrowse : chrX:11269795-11296894 (+) // 99.3 //
Probeset : 1635382_at
Accessions : protein= NP_001096955; /// NP_001096956; /// NP_001162718; /// NP_001162719; /// NP_001162720; /// NP_511120; /// NP_727518; /// NP_727519; /// NP_727520; /// NP_996402; /// NP_996403; /// NP_996404; /// NP_996405; /// NP_996406; /// NP_996407;, nucleotide= NM_001103485; /// NM_001103486; /// NM_001169247; /// NM_001169248; /// NM_001169249; /// NM_078565; /// NM_167280; /// NM_167281; /// NM_167282; /// NM_206679; /// NM_206680; /// NM_206681; /// NM_206682; /// NM_206683; /// NM_206684;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : 0004385 // guanylate kinase activity // traceable author statement /// 0004871 // signal transducer activity // inferred
FlyMine data for FBgn0001624.
Homophila reports that CG1725 is a close match (1e-13) to human gene TJP2;ZO2 (NP_004808), a gene associated with Hypercholanemia, familial, 607748 (3).
BioGrid reports that CG1725 interacts with CG5410 CG17666 CG17826 CG30387 CG4761 CG8301 CG9572 CG9665 CG9986 CG11579 CG5055 CG6383 CG6383 CG12348 CG5462 .
TRiP has 11 RNAi stocks for FBgn0001624 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001624 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain118 ± 104 of 4 2.70Up
Head434 ± 374 of 4 9.90Up
Eye1174 ± 1004 of 426.63Up
Thoracicoabdominal ganglion39 ± 24 of 4 0.90None
Salivary gland12 ± 10 of 4 0.29Down
Crop26 ± 24 of 4 0.60Down
Midgut8 ± 10 of 4 0.20Down
Tubule10 ± 00 of 4 0.20Down
Hindgut22 ± 14 of 4 0.50Down
Heart12 ± 22 of 4 0.29Down
Fat body11 ± 31 of 4 0.25Down
Ovary7 ± 03 of 4 0.20Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands7 ± 10 of 4 0.20Down
Virgin spermatheca12 ± 11 of 4 0.29Down
Mated spermatheca16 ± 33 of 4 0.38Down
Adult carcass52 ± 54 of 4 1.20None
Larval CNS35 ± 74 of 4 0.80None
Larval Salivary gland17 ± 21 of 4 0.40Down
Larval midgut5 ± 10 of 4 0.12Down
Larval tubule10 ± 11 of 4 0.20Down
Larval hindgut9 ± 04 of 4 0.22Down
Larval fat body10 ± 01 of 4 0.20Down
Larval trachea22 ± 281 of 4 0.50None
Larval carcass8 ± 10 of 4 0.19Down
S2 cells (growing)16 ± 14 of 4 0.38Down
Whole fly44 ± 54 of 4

Looking for FBgn0001624. 4 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime