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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001942 through 18771 annotations produced 1 hits



Eukaryotic initiation factor 4a (eIF-4a):

Annotation Number : CG9075
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001942
Gbrowse : chr2L:5981758-5985559 (+) // 99.23 //
Probeset : 1638664_s_at
Accessions : protein= NP_476595; /// NP_723137; /// NP_723138; /// NP_723139;, nucleotide= NM_057247; /// NM_164668; /// NM_164669; /// NM_164670;
Pathway : via spliceosome // inferred from mutant phenotype /// 0002168 // instar larval development // traceable author statemen
Interpro : 0005634 // nucleus // inferred by curator /// 0005829 // cytosol // inferred from sequence or structural similarity ///
FlyMine data for FBgn0001942.
BDGP gene expression has embryonic in situ data for eIF-4a: 4 pix of staining in 1 body parts.
BioGrid reports that CG9075 interacts with CG9572 CG4654 CG6376 CG3936 CG5671 CG3839 .
TRiP has 1 RNAi stocks for FBgn0001942 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001942 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3005 624 of 4 1.00None
Head3607 944 of 4 1.30Up
Eye4196 1634 of 4 1.46Up
Thoracicoabdominal ganglion3503 664 of 4 1.20Up
Salivary gland7727 3024 of 4 2.69Up
Crop3985 1324 of 4 1.40Up
Midgut3541 804 of 4 1.20Up
Tubule4480 1174 of 4 1.60Up
Hindgut3746 874 of 4 1.30Up
Heart4465 2204 of 4 1.56Up
Fat body4964 8564 of 4 1.73Up
Ovary2631 374 of 4 0.90None
Testis1529 494 of 4 0.50Down
Male accessory glands6215 1534 of 4 2.20Up
Virgin spermatheca4423 1184 of 4 1.54Up
Mated spermatheca4488 1284 of 4 1.56Up
Adult carcass4088 1234 of 4 1.40Up
Larval CNS2615 1044 of 4 0.91None
Larval Salivary gland6080 1714 of 4 2.12Up
Larval midgut3780 564 of 4 1.32Up
Larval tubule4102 944 of 4 1.40Up
Larval hindgut3810 724 of 4 1.33Up
Larval fat body5477 5454 of 4 1.90Up
Larval trachea3528 1694 of 4 1.23Up
Larval carcass3864 2054 of 4 1.35Up
S2 cells (growing)3811 344 of 4 1.33Up
Whole fly2870 914 of 4

Looking for FBgn0001942. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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