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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001965 through 18771 annotations produced 1 hits



lethal 25 in the black-reduced region (Sos):

Annotation Number : CG7793
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001965
Gbrowse : chr2L:13813827-13819826 (+) // 100.0 //
Probeset : 1633335_at
Accessions : protein= NP_476597;, nucleotide= NM_057249;
Pathway : open tracheal system // inferred from mutant phenotype /// 0008293 // torso signaling pathway // traceable author state
Interpro : embryo // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 003
FlyMine data for FBgn0001965.
Homophila reports that CG7793 is a close match (0) to human gene GF1;GINGF;HGF;NS4;SOS1 (NP_005624), a gene associated with Fibromatosis, gingival, 135300 (3);Noonan syndrome 4, 610733 (3).
BioGrid reports that CG7793 interacts with CG9025 CG6033 .
TRiP has 4 RNAi stocks for FBgn0001965 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001965 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain344 ± 64 of 4 3.50Up
Head149 ± 64 of 4 1.50Up
Eye130 ± 94 of 4 1.33Up
Thoracicoabdominal ganglion249 ± 74 of 4 2.50Up
Salivary gland93 ± 114 of 4 0.96None
Crop100 ± 24 of 4 1.00None
Midgut79 ± 54 of 4 0.80None
Tubule82 ± 14 of 4 0.80Down
Hindgut85 ± 54 of 4 0.90None
Heart63 ± 34 of 4 0.65Down
Fat body50 ± 24 of 4 0.51Down
Ovary275 ± 84 of 4 2.80Up
Testis60 ± 34 of 4 0.60Down
Male accessory glands80 ± 54 of 4 0.80None
Virgin spermatheca56 ± 34 of 4 0.58Down
Mated spermatheca67 ± 34 of 4 0.69Down
Adult carcass52 ± 34 of 4 0.50Down
Larval CNS271 ± 274 of 4 2.76Up
Larval Salivary gland96 ± 34 of 4 0.98None
Larval midgut97 ± 74 of 4 0.99None
Larval tubule98 ± 94 of 4 1.00None
Larval hindgut109 ± 14 of 4 1.12None
Larval fat body56 ± 34 of 4 0.60Down
Larval trachea75 ± 54 of 4 0.77Down
Larval carcass67 ± 34 of 4 0.69Down
S2 cells (growing)176 ± 44 of 4 1.79Up
Whole fly98 ± 74 of 4

Looking for FBgn0001965. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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