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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001970 through 18771 annotations produced 1 hits



Polypeptide N-acetylgalactosaminyltransferase 35A (Pgant35A):

Annotation Number : CG7480
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001970
Gbrowse : chr2L:14359217-14361443 (+) // 100.0 //
Probeset : 1632680_at
Accessions : protein= NP_652069;, nucleotide= NM_143812;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : "0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0004653 // polypept
FlyMine data for FBgn0001970.
Homophila reports that CG7480 is a close match (5e-88) to human gene GALNT3;HFTC;HHS (NP_004473), a gene associated with Hyperostosis-hyperphosphatemia syndrome, 610233 (3);Tumoral calcinosis, hyperphosphatemic, familial, 211900 (3).
VDRC has 2 RNAi stocks for FBgn0001970 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 24 of 4 1.20None
Head44 34 of 4 1.00None
Eye56 34 of 4 1.28Up
Thoracicoabdominal ganglion56 14 of 4 1.30Up
Salivary gland31 41 of 4 0.72Down
Crop37 14 of 4 0.80Down
Midgut23 14 of 4 0.50Down
Tubule29 04 of 4 0.70Down
Hindgut25 14 of 4 0.60Down
Heart20 24 of 4 0.47Down
Fat body20 44 of 4 0.47Down
Ovary65 44 of 4 1.50Up
Testis12 22 of 4 0.30Down
Male accessory glands55 24 of 4 1.30Up
Virgin spermatheca20 12 of 4 0.46Down
Mated spermatheca23 11 of 4 0.53Down
Adult carcass28 21 of 4 0.70Down
Larval CNS37 44 of 4 0.86None
Larval Salivary gland63 14 of 4 1.44Up
Larval midgut28 24 of 4 0.65Down
Larval tubule51 24 of 4 1.20None
Larval hindgut34 14 of 4 0.79Down
Larval fat body21 50 of 4 0.50Down
Larval trachea65 144 of 4 1.50None
Larval carcass39 14 of 4 0.89None
S2 cells (growing)86 24 of 4 1.97Up
Whole fly43 14 of 4

Looking for FBgn0001970. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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