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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001983 through 18771 annotations produced 1 hits



warniu (wor):

Annotation Number : CG4158
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001983
Gbrowse : chr2L:15423292-15425585 (-) // 100.0 //
Probeset : 1631502_at
Accessions : protein= NP_476601;, nucleotide= NM_057253;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription fa
FlyMine data for FBgn0001983.
BDGP gene expression has embryonic in situ data for wor: 13 pix of staining in 13 body parts.
Homophila reports that CG4158 is a close match (3e-11) to human gene HSAL1;SALL1;TBS (NP_002959), a gene associated with Townes-Brocks branchiootorenal-like syndrome, 107480 (3);Townes-Brocks syndrome, 107480 (3).
VDRC has 2 RNAi stocks for FBgn0001983 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.40None
Head0 00 of 4 0.10None
Eye2 00 of 4 0.35None
Thoracicoabdominal ganglion1 00 of 4 0.20None
Salivary gland5 10 of 4 0.86None
Crop5 20 of 4 0.80None
Midgut5 10 of 4 0.80None
Tubule2 00 of 4 0.40Down
Hindgut1 00 of 4 0.20None
Heart0 00 of 4 0.06None
Fat body12 20 of 4 2.04None
Ovary1 00 of 4 0.20None
Testis2 00 of 4 0.30None
Male accessory glands2 00 of 4 0.40None
Virgin spermatheca1 00 of 4 0.20None
Mated spermatheca1 00 of 4 0.27None
Adult carcass5 30 of 4 0.90None
Larval CNS446 374 of 470.38Up
Larval Salivary gland3 10 of 4 0.56None
Larval midgut4 10 of 4 0.64None
Larval tubule2 10 of 4 0.40None
Larval hindgut2 00 of 4 0.35None
Larval fat body2 00 of 4 0.40None
Larval trachea2 10 of 4 0.32None
Larval carcass0 00 of 4 0.15None
S2 cells (growing)1 00 of 4 0.22None
Whole fly6 20 of 4

Looking for FBgn0001983. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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