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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001987 through 18771 annotations produced 1 hits



gliotactin (Gli):

Annotation Number : CG3903
Flybase ID : FBgn0001987
Gbrowse : chr2L:15756000-15762755 (-) // 100.0 //
Probeset : 1624203_s_at
Accessions : protein= NP_476602; /// NP_723928; /// NP_723929; /// NP_723930; /// NP_723931;, nucleotide= NM_057254; /// NM_165127; /// NM_165128; /// NM_165129; /// NM_165130;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035321 // maintenance of imaginal disc-derived wing hair or
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
FlyMine data for FBgn0001987.
BDGP gene expression has embryonic in situ data for Gli: 23 pix of staining in 25 body parts.
Homophila reports that CG3903 is a close match (3e-25) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
BioGrid reports that CG3903 interacts with CG5499 CG5460 CG3936 .
TRiP has 2 RNAi stocks for FBgn0001987 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001987 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 24 of 4 0.40Down
Head234 174 of 4 2.60Up
Eye378 154 of 4 4.18Up
Thoracicoabdominal ganglion55 44 of 4 0.60Down
Salivary gland188 114 of 4 2.08Up
Crop311 124 of 4 3.40Up
Midgut37 24 of 4 0.40Down
Tubule31 53 of 4 0.30Down
Hindgut171 104 of 4 1.90Up
Heart17 34 of 4 0.19Down
Fat body21 64 of 4 0.24Down
Ovary53 34 of 4 0.60Down
Testis49 14 of 4 0.50Down
Male accessory glands157 54 of 4 1.70Up
Virgin spermatheca219 104 of 4 2.42Up
Mated spermatheca343 504 of 4 3.79Up
Adult carcass111 24 of 4 1.20None
Larval CNS127 134 of 4 1.41Up
Larval Salivary gland390 124 of 4 4.31Up
Larval midgut24 44 of 4 0.27Down
Larval tubule52 14 of 4 0.60Down
Larval hindgut297 54 of 4 3.29Up
Larval fat body26 24 of 4 0.30Down
Larval trachea801 354 of 4 8.84Up
Larval carcass411 434 of 4 4.54Up
S2 cells (growing)141 144 of 4 1.57Up
Whole fly90 104 of 4

Looking for FBgn0001987. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime