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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0002021 through 18771 annotations produced 1 hits

lethal (2) 37Bb (l(2)37Bb):

Annotation Number : CG10655
Flybase ID : FBgn0002021
Gbrowse : chr2L:19049842-19051606 (-) // 100.0 //
Probeset : 1639905_at
Accessions : protein= NP_536791;, nucleotide= NM_080530;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation
FlyMine data for FBgn0002021.
BDGP gene expression has embryonic in situ data for l(2)37Bb: 11 pix of staining in 9 body parts.
BioGrid reports that CG10655 interacts with CG5829 .
VDRC has 3 RNAi stocks for FBgn0002021 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 34 of 4 1.20None
Head140 94 of 4 1.10None
Eye138 114 of 4 1.05None
Thoracicoabdominal ganglion203 24 of 4 1.50Up
Salivary gland95 24 of 4 0.72None
Crop138 64 of 4 1.00None
Midgut136 54 of 4 1.00None
Tubule159 74 of 4 1.20Up
Hindgut126 44 of 4 1.00None
Heart194 74 of 4 1.47Up
Fat body143 184 of 4 1.08None
Ovary193 64 of 4 1.50Up
Testis142 34 of 4 1.10None
Male accessory glands115 64 of 4 0.90None
Virgin spermatheca119 74 of 4 0.90None
Mated spermatheca148 44 of 4 1.12None
Adult carcass122 34 of 4 0.90None
Larval CNS130 94 of 4 0.98None
Larval Salivary gland135 34 of 4 1.02None
Larval midgut86 34 of 4 0.65None
Larval tubule133 34 of 4 1.00None
Larval hindgut164 94 of 4 1.24None
Larval fat body107 94 of 4 0.80None
Larval trachea142 204 of 4 1.07None
Larval carcass149 64 of 4 1.13None
S2 cells (growing)159 24 of 4 1.20None
Whole fly132 174 of 4

Looking for FBgn0002021. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime