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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002031 through 18771 annotations produced 1 hits



transcription unit No. 4 (l(2)37Cc):

Annotation Number : CG10691
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002031
Gbrowse : chr2L:19122039-19123852 (-) // 100.0 //
Probeset : 1630771_s_at
Accessions : protein= NP_001163012; /// NP_476607; /// NP_724165;, nucleotide= NM_001169541; /// NM_057259; /// NM_165281;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 000573
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0002031.
BDGP gene expression has embryonic in situ data for l(2)37Cc: 13 pix of staining in 12 body parts.
Homophila reports that CG10691 is a close match (2e-105) to human gene PHB (NP_002625), a gene associated with Breast cancer, sporadic (3).
BioGrid reports that CG10691 interacts with CG32705 CG5846 CG7605 .
TRiP has 2 RNAi stocks for FBgn0002031 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002031 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain411 44 of 4 0.60Down
Head394 94 of 4 0.50Down
Eye458 194 of 4 0.62Down
Thoracicoabdominal ganglion555 114 of 4 0.80Down
Salivary gland536 144 of 4 0.73Down
Crop669 214 of 4 0.90Down
Midgut712 104 of 4 1.00None
Tubule1116 404 of 4 1.50Up
Hindgut800 174 of 4 1.10Up
Heart524 74 of 4 0.71Down
Fat body863 344 of 4 1.17Up
Ovary1062 84 of 4 1.40Up
Testis670 194 of 4 0.90Down
Male accessory glands667 584 of 4 0.90None
Virgin spermatheca1183 184 of 4 1.60Up
Mated spermatheca1331 504 of 4 1.80Up
Adult carcass576 334 of 4 0.80Down
Larval CNS778 314 of 4 1.06None
Larval Salivary gland784 344 of 4 1.06None
Larval midgut568 384 of 4 0.77Down
Larval tubule444 114 of 4 0.60Down
Larval hindgut980 594 of 4 1.33Up
Larval fat body494 194 of 4 0.70Down
Larval trachea688 1054 of 4 0.93None
Larval carcass775 704 of 4 1.05None
S2 cells (growing)1046 174 of 4 1.42Up
Whole fly737 154 of 4

Looking for FBgn0002031. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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