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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002044 through 18771 annotations produced 1 hits



second mitotic wave missing (swm):

Annotation Number : CG10084
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002044
Gbrowse : chr2L:19493257-19497987 (+) // 100.0 //
Probeset : 1635567_s_at
Accessions : protein= NP_609976; /// NP_724201;, nucleotide= NM_136132; /// NM_165304;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0002044.
BioGrid reports that CG10084 interacts with CG2163 .
TRiP has 1 RNAi stocks for FBgn0002044 available for purchase.
VDRC has 3 RNAi stocks for FBgn0002044 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain428 254 of 4 1.30Up
Head336 414 of 4 1.00None
Eye303 114 of 4 0.91None
Thoracicoabdominal ganglion424 194 of 4 1.30Up
Salivary gland406 274 of 4 1.22None
Crop514 144 of 4 1.50Up
Midgut286 114 of 4 0.90Down
Tubule316 94 of 4 1.00None
Hindgut366 144 of 4 1.10None
Heart328 94 of 4 0.99None
Fat body402 214 of 4 1.21Up
Ovary898 34 of 4 2.70Up
Testis59 34 of 4 0.20Down
Male accessory glands392 144 of 4 1.20Up
Virgin spermatheca386 204 of 4 1.16None
Mated spermatheca407 74 of 4 1.22Up
Adult carcass294 94 of 4 0.90Down
Larval CNS590 844 of 4 1.78Up
Larval Salivary gland613 364 of 4 1.85Up
Larval midgut356 114 of 4 1.07None
Larval tubule450 224 of 4 1.40Up
Larval hindgut494 154 of 4 1.49Up
Larval fat body389 214 of 4 1.20None
Larval trachea420 224 of 4 1.26Up
Larval carcass439 304 of 4 1.32Up
S2 cells (growing)346 84 of 4 1.04None
Whole fly332 84 of 4

Looking for FBgn0002044. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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