FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0002069 through 18771 annotations produced 1 hits

lethal(2)49Db (Aats-asp):

Annotation Number : CG3821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002069
Gbrowse : chr2R:8767823-8770675 (+) // 100.0 //
Probeset : 1629026_at
Accessions : protein= NP_476609;, nucleotide= NM_057261;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred fr
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0002069.
BDGP gene expression has embryonic in situ data for Aats-asp: 4 pix of staining in 1 body parts.
Homophila reports that CG3821 is a close match (1e-11) to human gene ASPRS. LBSL;DARS2 (NP_060592), a gene associated with Leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation, 611105 (3).
BioGrid reports that CG3821 interacts with CG4853 CG4654 CG6376 CG4528 Dmel CG18350 .
VDRC has 1 RNAi stocks for FBgn0002069 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	299 ± 5	4 of 4	0.40	Down
Head	471 ± 12	4 of 4	0.70	Down
Eye	460 ± 6	4 of 4	0.67	Down
Thoracicoabdominal ganglion	412 ± 12	4 of 4	0.60	Down
Salivary gland	1093 ± 38	4 of 4	1.58	Up
Crop	600 ± 11	4 of 4	0.90	Down
Midgut	1602 ± 29	4 of 4	2.30	Up
Tubule	1775 ± 72	4 of 4	2.60	Up
Hindgut	747 ± 11	4 of 4	1.10	None
Heart	682 ± 16	4 of 4	0.99	None
Fat body	759 ± 74	4 of 4	1.10	None
Ovary	910 ± 4	4 of 4	1.30	Up
Testis	155 ± 1	4 of 4	0.20	Down
Male accessory glands	591 ± 11	4 of 4	0.90	Down
Virgin spermatheca	1113 ± 25	4 of 4	1.61	Up
Mated spermatheca	1348 ± 59	4 of 4	1.95	Up
Adult carcass	490 ± 12	4 of 4	0.70	Down
Larval CNS	872 ± 20	4 of 4	1.26	Up
Larval Salivary gland	1887 ± 59	4 of 4	2.73	Up
Larval midgut	1532 ± 20	4 of 4	2.21	Up
Larval tubule	1323 ± 13	4 of 4	1.90	Up
Larval hindgut	1194 ± 54	4 of 4	1.73	Up
Larval fat body	1745 ± 164	4 of 4	2.50	Up
Larval trachea	1336 ± 106	4 of 4	1.93	Up
Larval carcass	1037 ± 32	4 of 4	1.50	Up
S2 cells (growing)	1653 ± 23	4 of 4	2.39	Up
Whole fly	691 ± 20	4 of 4

Looking for FBgn0002069. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720