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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002121 through 18771 annotations produced 1 hits



lethal giant larvae (l(2)gl):

Annotation Number : CG2671
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002121
Gbrowse : chr2L:9835-21372 (-) // 100.0 //
Probeset : 1637410_s_at
Accessions : protein= NP_523439; /// NP_722583; /// NP_722584; /// NP_722585; /// NP_722586; /// NP_722587;, nucleotide= NM_078715; /// NM_164348; /// NM_164349; /// NM_164350; /// NM_164351; /// NM_164352;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix
Interpro : 0005515 // protein binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred
FlyMine data for FBgn0002121.
BDGP gene expression has embryonic in situ data for l(2)gl: 4 pix of staining in 1 body parts.
BioGrid reports that CG2671 interacts with CG6383 CG6383 CG9885 CG3779 CG3779 CG32717 CG5462 CG5884 .
TRiP has 5 RNAi stocks for FBgn0002121 available for purchase.
VDRC has 3 RNAi stocks for FBgn0002121 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 ± 54 of 4 0.40Down
Head117 ± 114 of 4 0.80None
Eye56 ± 04 of 4 0.39Down
Thoracicoabdominal ganglion68 ± 24 of 4 0.50Down
Salivary gland217 ± 104 of 4 1.50Up
Crop292 ± 184 of 4 2.00Up
Midgut702 ± 274 of 4 4.80Up
Tubule259 ± 114 of 4 1.80Up
Hindgut363 ± 114 of 4 2.50Up
Heart132 ± 114 of 4 0.91None
Fat body201 ± 134 of 4 1.39Up
Ovary175 ± 54 of 4 1.20Up
Testis46 ± 24 of 4 0.30Down
Male accessory glands104 ± 44 of 4 0.70Down
Virgin spermatheca333 ± 144 of 4 2.30Up
Mated spermatheca366 ± 244 of 4 2.53Up
Adult carcass126 ± 54 of 4 0.90None
Larval CNS346 ± 654 of 4 2.38Up
Larval Salivary gland434 ± 194 of 4 2.99Up
Larval midgut1263 ± 224 of 4 8.70Up
Larval tubule394 ± 144 of 4 2.70Up
Larval hindgut1031 ± 354 of 4 7.11Up
Larval fat body127 ± 164 of 4 0.90None
Larval trachea390 ± 224 of 4 2.69Up
Larval carcass619 ± 274 of 4 4.27Up
S2 cells (growing)594 ± 244 of 4 4.10Up
Whole fly145 ± 54 of 4

Looking for FBgn0002121. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime