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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002283 through 18771 annotations produced 1 hits



lethal(3)73Ah (l(3)73Ah):

Annotation Number : CG4195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002283
Gbrowse : chr3L:16581660-16583234 (+) // 100.0 //
Probeset : 1631479_at
Accessions : protein= NP_524933;, nucleotide= NM_080194;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0002283.
BDGP gene expression has embryonic in situ data for l(3)73Ah: 12 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0002283 available for purchase.
VDRC has 3 RNAi stocks for FBgn0002283 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain203 ± 24 of 4 1.10Up
Head100 ± 34 of 4 0.50Down
Eye172 ± 104 of 4 0.94None
Thoracicoabdominal ganglion129 ± 14 of 4 0.70Down
Salivary gland171 ± 34 of 4 0.93Down
Crop105 ± 34 of 4 0.60Down
Midgut59 ± 24 of 4 0.30Down
Tubule121 ± 34 of 4 0.70Down
Hindgut85 ± 04 of 4 0.50Down
Heart59 ± 44 of 4 0.32Down
Fat body41 ± 34 of 4 0.22Down
Ovary521 ± 64 of 4 2.80Up
Testis156 ± 44 of 4 0.90Down
Male accessory glands195 ± 54 of 4 1.10None
Virgin spermatheca74 ± 54 of 4 0.40Down
Mated spermatheca75 ± 44 of 4 0.41Down
Adult carcass58 ± 74 of 4 0.30Down
Larval CNS177 ± 74 of 4 0.97None
Larval Salivary gland298 ± 214 of 4 1.62Up
Larval midgut43 ± 24 of 4 0.24Down
Larval tubule70 ± 34 of 4 0.40Down
Larval hindgut75 ± 34 of 4 0.41Down
Larval fat body92 ± 174 of 4 0.50Down
Larval trachea151 ± 64 of 4 0.82Down
Larval carcass110 ± 24 of 4 0.60Down
S2 cells (growing)152 ± 34 of 4 0.83Down
Whole fly184 ± 34 of 4

Looking for FBgn0002283. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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