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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002431 through 18771 annotations produced 1 hits



hyperplastic discs (hyd):

Annotation Number : CG9484
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002431
Gbrowse : chr3R:5540343-5551333 (-) // 100.0 //
Probeset : 1641297_at
Accessions : protein= NP_524296;, nucleotide= NM_079572;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferr
FlyMine data for FBgn0002431.
BDGP gene expression has embryonic in situ data for hyd: 4 pix of staining in 1 body parts.
Homophila reports that CG9484 is a close match (6e-13) to human gene HERC2;SHEP1 (NP_004658), a gene associated with [Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
BioGrid reports that CG9484 interacts with CG4637 .
TRiP has 1 RNAi stocks for FBgn0002431 available for purchase.
VDRC has 3 RNAi stocks for FBgn0002431 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain473 44 of 4 1.20Up
Head341 154 of 4 0.90None
Eye303 174 of 4 0.79None
Thoracicoabdominal ganglion344 174 of 4 0.90None
Salivary gland726 404 of 4 1.90Up
Crop523 134 of 4 1.40Up
Midgut306 154 of 4 0.80None
Tubule604 74 of 4 1.60Up
Hindgut416 54 of 4 1.10None
Heart434 154 of 4 1.13None
Fat body487 174 of 4 1.27Up
Ovary756 94 of 4 2.00Up
Testis570 74 of 4 1.50Up
Male accessory glands467 124 of 4 1.20Up
Virgin spermatheca260 44 of 4 0.68Down
Mated spermatheca283 114 of 4 0.74Down
Adult carcass312 184 of 4 0.80None
Larval CNS606 214 of 4 1.58Up
Larval Salivary gland595 164 of 4 1.55Up
Larval midgut255 84 of 4 0.67Down
Larval tubule473 34 of 4 1.20Up
Larval hindgut374 54 of 4 0.98None
Larval fat body267 194 of 4 0.70Down
Larval trachea518 174 of 4 1.35Up
Larval carcass338 234 of 4 0.88None
S2 cells (growing)493 114 of 4 1.29Up
Whole fly383 264 of 4

Looking for FBgn0002431. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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