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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002441 through 18771 annotations produced 2 hits



tumor-supressor (l(3)mbt):

Annotation Number : CG5954
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002441
Gbrowse : chr3R:23091951-23098069 (-) // 100.0 //
Probeset : 1637599_at
Accessions : protein= NP_524529; /// NP_733209;, nucleotide= NM_079805; /// NM_170330;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0002441.
TRiP has 2 RNAi stocks for FBgn0002441 available for purchase.
VDRC has 3 RNAi stocks for FBgn0002441 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.80None
Head3 11 of 4 0.60None
Eye3 10 of 4 0.55None
Thoracicoabdominal ganglion1 00 of 4 0.30None
Salivary gland18 21 of 4 3.31Up
Crop7 00 of 4 1.30None
Midgut10 41 of 4 1.80None
Tubule4 00 of 4 0.90Down
Hindgut8 10 of 4 1.50None
Heart4 11 of 4 0.76None
Fat body12 43 of 4 2.28Up
Ovary2 01 of 4 0.40None
Testis16 14 of 4 3.00Up
Male accessory glands4 20 of 4 0.80None
Virgin spermatheca4 10 of 4 0.77None
Mated spermatheca4 01 of 4 0.82None
Adult carcass5 20 of 4 0.90None
Larval CNS4 32 of 4 0.88None
Larval Salivary gland10 22 of 4 1.84None
Larval midgut21 40 of 4 3.72Up
Larval tubule7 22 of 4 1.30None
Larval hindgut3 01 of 4 0.68None
Larval fat body6 21 of 4 1.20None
Larval trachea2 20 of 4 0.38None
Larval carcass4 00 of 4 0.88None
S2 cells (growing)3 10 of 4 0.54None
Whole fly5 11 of 4



tumor-supressor (l(3)mbt):

Annotation Number : CG5954
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002441
Gbrowse : chr3R:23092046-23098995 (-) // 100.0 //
Probeset : 1627452_a_at
Accessions : protein= NP_524529; /// NP_733209;, nucleotide= NM_079805; /// NM_170330;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0002441.
TRiP has 2 RNAi stocks for FBgn0002441 available for purchase.
VDRC has 3 RNAi stocks for FBgn0002441 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain93 34 of 4 1.40Up
Head54 44 of 4 0.80None
Eye72 64 of 4 1.09None
Thoracicoabdominal ganglion100 24 of 4 1.50Up
Salivary gland133 94 of 4 2.01Up
Crop165 54 of 4 2.50Up
Midgut35 14 of 4 0.50Down
Tubule99 44 of 4 1.50Up
Hindgut98 24 of 4 1.50Up
Heart56 64 of 4 0.85None
Fat body54 74 of 4 0.82None
Ovary169 24 of 4 2.60Up
Testis97 44 of 4 1.50Up
Male accessory glands57 44 of 4 0.90None
Virgin spermatheca70 54 of 4 1.06None
Mated spermatheca72 14 of 4 1.10None
Adult carcass73 84 of 4 1.10None
Larval CNS98 44 of 4 1.49Up
Larval Salivary gland59 04 of 4 0.90None
Larval midgut34 04 of 4 0.52Down
Larval tubule38 34 of 4 0.60Down
Larval hindgut53 54 of 4 0.81None
Larval fat body41 23 of 4 0.60Down
Larval trachea60 84 of 4 0.91None
Larval carcass49 54 of 4 0.74None
S2 cells (growing)128 44 of 4 1.94Up
Whole fly66 54 of 4

Looking for FBgn0002441. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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