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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002522 through 18771 annotations produced 1 hits



Labial (lab):

Annotation Number : CG1264
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002522
Gbrowse : chr3R:2487139-2504312 (-) // 100.0 //
Probeset : 1635679_at
Accessions : protein= NP_476613;, nucleotide= NM_057265;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0002522.
BDGP gene expression has embryonic in situ data for lab: 64 pix of staining in 11 body parts.
Homophila reports that CG1264 is a close match (3e-12) to human gene HOX4D;HOXD10 (NP_002139), a gene associated with Charcot-Marie-Tooth disease, foot deformity of (3);Vertical talus, congenital, 192950 (3).
BioGrid reports that CG1264 interacts with CG10325 CG10325 CG1028 CG1028 CG2189 CG11648 CG11648 CG1030 CG1030 CG10388 CG10388 CG31481 .
TRiP has 1 RNAi stocks for FBgn0002522 available for purchase.
VDRC has 3 RNAi stocks for FBgn0002522 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 34 of 4 1.50None
Head15 04 of 4 1.70Up
Eye5 11 of 4 0.56None
Thoracicoabdominal ganglion2 10 of 4 0.20Down
Salivary gland14 11 of 4 1.46Up
Crop5 21 of 4 0.60None
Midgut94 34 of 4 9.90Up
Tubule1 00 of 4 0.20Down
Hindgut1 10 of 4 0.20Down
Heart1 00 of 4 0.16Down
Fat body7 01 of 4 0.80None
Ovary1 00 of 4 0.10Down
Testis10 04 of 4 1.10None
Male accessory glands4 10 of 4 0.40Down
Virgin spermatheca2 00 of 4 0.23Down
Mated spermatheca1 10 of 4 0.17Down
Adult carcass5 20 of 4 0.50None
Larval CNS12 24 of 4 1.34None
Larval Salivary gland2 10 of 4 0.21Down
Larval midgut165 114 of 417.23Up
Larval tubule1 00 of 4 0.10Down
Larval hindgut2 00 of 4 0.28Down
Larval fat body1 10 of 4 0.20Down
Larval trachea1 10 of 4 0.17Down
Larval carcass2 00 of 4 0.21Down
S2 cells (growing)1 00 of 4 0.17Down
Whole fly9 03 of 4

Looking for FBgn0002522. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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