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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0002534 through 18771 annotations produced 1 hits

cuticle p. III (Lcp3):

Annotation Number : CG2043
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002534
Gbrowse : chr2R:4322948-4323523 (+) // 100.0 //
Probeset : 1634353_at
Accessions : protein= NP_476621;, nucleotide= NM_057273;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0002534.
VDRC has 4 RNAi stocks for FBgn0002534 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 1.10None
Head6 10 of 4 1.40None
Eye64 233 of 413.57None
Thoracicoabdominal ganglion8 20 of 4 1.80None
Salivary gland5 10 of 4 1.07None
Crop1 00 of 4 0.40None
Midgut7 20 of 4 1.70None
Tubule4 00 of 4 0.90None
Hindgut4 20 of 4 0.90None
Heart0 00 of 4 0.21None
Fat body11 120 of 4 2.48None
Ovary3 10 of 4 0.80None
Testis1 00 of 4 0.40None
Male accessory glands6 40 of 4 1.30None
Virgin spermatheca2 00 of 4 0.47None
Mated spermatheca5 20 of 4 1.12None
Adult carcass22 70 of 4 4.80None
Larval CNS26 241 of 4 5.70None
Larval Salivary gland8 30 of 4 1.78None
Larval midgut15 00 of 4 3.24Up
Larval tubule10 50 of 4 2.30None
Larval hindgut2640 5214 of 4558.91Up
Larval fat body36 181 of 4 7.80None
Larval trachea4694 9134 of 4993.52Up
Larval carcass4388 6884 of 4928.79Up
S2 cells (growing)8 10 of 4 1.71None
Whole fly4 20 of 4

Looking for FBgn0002534. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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