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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0002543 through 18771 annotations produced 1 hits

Robo2 (lea):

Annotation Number : CG5481
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002543
Gbrowse : chr2L:1380887-1420449 (-) // 100.0 //
Probeset : 1636905_at
Accessions : protein= NP_536792;, nucleotide= NM_080531;
Pathway : open tracheal system // traceable author statement /// 0007432 // salivary gland boundary specification // inferred fro
Interpro : 0005886 // plasma membrane // non-traceable author statement
FlyMine data for FBgn0002543.
Homophila reports that CG5481 is a close match (3e-11) to human gene (NP_008995), a gene associated with .
BioGrid reports that CG5481 interacts with CG7856 CG4032 CG15112 CG15112 CG13521 CG13521 CG13521 CG13521 CG13521 CG13521 CG13521 CG13521 CG13521 CG13521 CG13521 CG13521 CG8355 CG8355 .
TRiP has 2 RNAi stocks for FBgn0002543 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002543 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 54 of 4 3.10Up
Head28 24 of 4 0.90None
Eye12 14 of 4 0.40Down
Thoracicoabdominal ganglion100 64 of 4 3.20Up
Salivary gland18 32 of 4 0.57None
Crop19 14 of 4 0.60None
Midgut52 24 of 4 1.70Up
Tubule32 34 of 4 1.00None
Hindgut39 34 of 4 1.30None
Heart58 54 of 4 1.86Up
Fat body149 174 of 4 4.72Up
Ovary4 01 of 4 0.10Down
Testis25 24 of 4 0.80None
Male accessory glands17 22 of 4 0.60None
Virgin spermatheca89 34 of 4 2.82Up
Mated spermatheca125 84 of 4 3.96Up
Adult carcass52 24 of 4 1.70Up
Larval CNS277 844 of 4 8.77Up
Larval Salivary gland9 21 of 4 0.30Down
Larval midgut37 24 of 4 1.19None
Larval tubule37 44 of 4 1.20None
Larval hindgut27 14 of 4 0.88None
Larval fat body130 44 of 4 4.10Up
Larval trachea99 104 of 4 3.14Up
Larval carcass37 44 of 4 1.18None
S2 cells (growing)72 14 of 4 2.28Up
Whole fly31 44 of 4

Looking for FBgn0002543. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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