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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002552 through 18771 annotations produced 1 hits



lines (lin):

Annotation Number : CG11770
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002552
Gbrowse : chr2R:4802032-4805739 (+) // 100.0 //
Probeset : 1623324_at
Accessions : protein= NP_524815;, nucleotide= NM_080076;
Pathway : open tracheal system // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from elec
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
FlyMine data for FBgn0002552.
BioGrid reports that CG11770 interacts with CG6235 CG7386 CG11648 .
TRiP has 2 RNAi stocks for FBgn0002552 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002552 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 24 of 4 0.50Down
Head49 24 of 4 0.50Down
Eye44 44 of 4 0.44Down
Thoracicoabdominal ganglion46 24 of 4 0.50Down
Salivary gland128 124 of 4 1.27None
Crop74 04 of 4 0.70Down
Midgut58 24 of 4 0.60Down
Tubule55 14 of 4 0.50Down
Hindgut77 24 of 4 0.80Down
Heart42 34 of 4 0.42Down
Fat body54 54 of 4 0.54Down
Ovary314 134 of 4 3.10Up
Testis43 44 of 4 0.40Down
Male accessory glands86 44 of 4 0.90None
Virgin spermatheca46 54 of 4 0.46Down
Mated spermatheca49 34 of 4 0.49Down
Adult carcass54 34 of 4 0.50Down
Larval CNS117 64 of 4 1.17None
Larval Salivary gland147 44 of 4 1.47Up
Larval midgut47 24 of 4 0.47Down
Larval tubule54 14 of 4 0.50Down
Larval hindgut71 24 of 4 0.71Down
Larval fat body54 04 of 4 0.50Down
Larval trachea59 24 of 4 0.59Down
Larval carcass85 14 of 4 0.85None
S2 cells (growing)131 24 of 4 1.30Up
Whole fly100 64 of 4

Looking for FBgn0002552. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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