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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002561 through 18771 annotations produced 1 hits



Lethal of Scute (l(1)sc):

Annotation Number : CG3839
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002561
Gbrowse : chrX:303755-304852 (+) // 100.0 //
Probeset : 1627194_at
Accessions : protein= NP_476623;, nucleotide= NM_057275;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0002561.
BDGP gene expression has embryonic in situ data for l(1)sc: 42 pix of staining in 24 body parts.
BioGrid reports that CG3839 interacts with CG5102 CG5102 CG5102 CG5102 CG33183 CG3619 CG1007 CG8365 CG8365 CG8365 CG8365 CG6494 CG6494 CG6494 CG6494 CG5460 CG9075 CG10377 CG7508 CG4029 CG8732 CG8118 CG2411 .
TRiP has 1 RNAi stocks for FBgn0002561 available for purchase.
VDRC has 5 RNAi stocks for FBgn0002561 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.50None
Head2 ± 10 of 4 2.20None
Eye1 ± 00 of 4 1.43None
Thoracicoabdominal ganglion0 ± 00 of 4 0.90None
Salivary gland6 ± 20 of 4 6.55None
Crop2 ± 10 of 4 2.30None
Midgut0 ± 00 of 4 0.70None
Tubule2 ± 00 of 4 2.50Up
Hindgut2 ± 10 of 4 2.50None
Heart0 ± 00 of 4 0.35None
Fat body8 ± 20 of 4 8.03Up
Ovary0 ± 00 of 4 0.30None
Testis0 ± 00 of 4 0.40None
Male accessory glands2 ± 10 of 4 2.10None
Virgin spermatheca3 ± 00 of 4 3.38Up
Mated spermatheca4 ± 20 of 4 4.55None
Adult carcass1 ± 10 of 4 1.90None
Larval CNS94 ± 244 of 494.70Up
Larval Salivary gland6 ± 20 of 4 6.43None
Larval midgut1 ± 00 of 4 1.08None
Larval tubule1 ± 00 of 4 1.50None
Larval hindgut1 ± 00 of 4 1.65None
Larval fat body2 ± 00 of 4 2.10None
Larval trachea1 ± 10 of 4 1.93None
Larval carcass0 ± 00 of 4 0.93None
S2 cells (growing)3 ± 10 of 4 3.30None
Whole fly1 ± 00 of 4

Looking for FBgn0002561. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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