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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002562 through 18771 annotations produced 1 hits



Larval serum protein 1 alpha (Lsp1alpha):

Annotation Number : CG2559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002562
Gbrowse : chrX:12384415-12386933 (+) // 100.0 //
Probeset : 1631803_at
Accessions : protein= NP_511138;, nucleotide= NM_078583;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0045735 // nutrient reservoir activity
FlyMine data for FBgn0002562.
BioGrid reports that CG2559 interacts with CG17285 .
VDRC has 4 RNAi stocks for FBgn0002562 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 11 of 4 1.60None
Head8 03 of 4 2.70Up
Eye5 22 of 4 1.69None
Thoracicoabdominal ganglion3 20 of 4 1.30None
Salivary gland12 71 of 4 3.98None
Crop1 00 of 4 0.50None
Midgut4 20 of 4 1.50None
Tubule2 00 of 4 0.70Down
Hindgut2 11 of 4 0.90None
Heart9 23 of 4 3.21Up
Fat body10 23 of 4 3.24Up
Ovary1 00 of 4 0.50None
Testis1 00 of 4 0.50None
Male accessory glands3 10 of 4 1.20None
Virgin spermatheca2 00 of 4 0.69None
Mated spermatheca3 10 of 4 1.22None
Adult carcass13 11 of 4 4.30Up
Larval CNS17 74 of 4 5.62Up
Larval Salivary gland3605 1114 of 41172.54Up
Larval midgut25 23 of 4 8.23Up
Larval tubule230 434 of 475.10Up
Larval hindgut2303 5124 of 4749.10Up
Larval fat body11264 12654 of 43663.20Up
Larval trachea740 5364 of 4240.86None
Larval carcass610 1274 of 4198.55Up
S2 cells (growing)3 10 of 4 1.03None
Whole fly3 00 of 4

Looking for FBgn0002562. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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