Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002564 through 18771 annotations produced 1 hits



Larval serum protein 1 gamma (Lsp1gamma):

Annotation Number : CG6821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002564
Gbrowse : chr3L:66432-69003 (+) // 100.0 //
Probeset : 1626429_at
Accessions : protein= NP_523868;, nucleotide= NM_079144;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0045735 // nutrient reservoir activity
FlyMine data for FBgn0002564.
BDGP gene expression has embryonic in situ data for Lsp1gamma: 53 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0002564 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.70None
Head8 ± 21 of 4 0.90None
Eye6 ± 22 of 4 0.73None
Thoracicoabdominal ganglion5 ± 10 of 4 0.60None
Salivary gland12 ± 30 of 4 1.45None
Crop12 ± 42 of 4 1.50None
Midgut32 ± 34 of 4 3.70Up
Tubule5 ± 10 of 4 0.70Down
Hindgut6 ± 11 of 4 0.70None
Heart15 ± 111 of 4 1.78None
Fat body13 ± 51 of 4 1.58None
Ovary1 ± 00 of 4 0.20None
Testis4 ± 00 of 4 0.60None
Male accessory glands4 ± 20 of 4 0.50None
Virgin spermatheca7 ± 00 of 4 0.84None
Mated spermatheca11 ± 22 of 4 1.30None
Adult carcass8 ± 20 of 4 1.00None
Larval CNS37 ± 154 of 4 4.27Up
Larval Salivary gland5990 ± 3454 of 4686.62Up
Larval midgut138 ± 224 of 415.82Up
Larval tubule769 ± 1714 of 488.20Up
Larval hindgut3908 ± 3724 of 4447.99Up
Larval fat body9924 ± 11304 of 41137.40Up
Larval trachea2288 ± 17374 of 4262.27None
Larval carcass2650 ± 3934 of 4303.81Up
S2 cells (growing)4 ± 00 of 4 0.49None
Whole fly8 ± 21 of 4

Looking for FBgn0002564. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime