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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002565 through 18771 annotations produced 1 hits



Larval serum protein-2 (Lsp2):

Annotation Number : CG6806
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002565
Gbrowse : chr3L:12122492-12124796 (+) // 100.0 //
Probeset : 1641634_at
Accessions : protein= NP_524816;, nucleotide= NM_080077;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0045735 // nutrient reservoir activity
FlyMine data for FBgn0002565.
VDRC has 6 RNAi stocks for FBgn0002565 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 23 of 4 0.90None
Head457 ± 1784 of 418.90None
Eye481 ± 1304 of 419.85Up
Thoracicoabdominal ganglion32 ± 54 of 4 1.30None
Salivary gland21 ± 41 of 4 0.87None
Crop15 ± 31 of 4 0.60None
Midgut19 ± 10 of 4 0.80None
Tubule10 ± 30 of 4 0.40Down
Hindgut9 ± 10 of 4 0.40Down
Heart149 ± 1054 of 4 6.16None
Fat body309 ± 2504 of 412.76None
Ovary7 ± 10 of 4 0.30Down
Testis9 ± 11 of 4 0.40Down
Male accessory glands14 ± 40 of 4 0.60None
Virgin spermatheca992 ± 2034 of 440.90Up
Mated spermatheca69 ± 233 of 4 2.84None
Adult carcass894 ± 1204 of 436.80Up
Larval CNS19 ± 24 of 4 0.81None
Larval Salivary gland6362 ± 1454 of 4262.08Up
Larval midgut52 ± 93 of 4 2.18None
Larval tubule809 ± 1884 of 433.30Up
Larval hindgut2843 ± 5324 of 4117.13Up
Larval fat body10393 ± 12074 of 4428.10Up
Larval trachea1004 ± 6674 of 441.37None
Larval carcass1326 ± 1904 of 454.63Up
S2 cells (growing)8 ± 10 of 4 0.34Down
Whole fly24 ± 33 of 4

Looking for FBgn0002565. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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