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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002566 through 18771 annotations produced 1 hits



light (lt):

Annotation Number : CG18028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002566
Gbrowse : chr2L:22817518-22833488 (+) // 100.0 //
Probeset : 1631509_a_at
Accessions : protein= NP_001036415; /// NP_001036416; /// NP_001036417;, nucleotide= NM_001042950; /// NM_001042951; /// NM_001042952;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic ann
FlyMine data for FBgn0002566.
BDGP gene expression has embryonic in situ data for lt: 4 pix of staining in 2 body parts.
BioGrid reports that CG18028 interacts with CG7057 CG9539 CG7776 CG8409 .
TRiP has 1 RNAi stocks for FBgn0002566 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain396 34 of 4 1.70Up
Head283 204 of 4 1.20None
Eye211 74 of 4 0.91None
Thoracicoabdominal ganglion429 104 of 4 1.90Up
Salivary gland493 104 of 4 2.13Up
Crop406 164 of 4 1.80Up
Midgut249 124 of 4 1.10None
Tubule178 64 of 4 0.80Down
Hindgut343 64 of 4 1.50Up
Heart211 54 of 4 0.92None
Fat body200 194 of 4 0.87None
Ovary309 84 of 4 1.30Up
Testis121 34 of 4 0.50Down
Male accessory glands370 94 of 4 1.60Up
Virgin spermatheca226 54 of 4 0.98None
Mated spermatheca245 104 of 4 1.06None
Adult carcass301 144 of 4 1.30Up
Larval CNS336 124 of 4 1.45Up
Larval Salivary gland404 74 of 4 1.75Up
Larval midgut204 44 of 4 0.88None
Larval tubule253 114 of 4 1.10None
Larval hindgut279 54 of 4 1.21Up
Larval fat body302 194 of 4 1.30Up
Larval trachea366 174 of 4 1.58Up
Larval carcass322 54 of 4 1.39Up
S2 cells (growing)444 154 of 4 1.92Up
Whole fly231 144 of 4

Looking for FBgn0002566. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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