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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002569 through 18771 annotations produced 1 hits



maltase (LvpD):

Annotation Number : CG8694
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002569
Gbrowse : chr2R:4341136-4343287 (+) // 99.8 //
Probeset : 1627464_at
Accessions : protein= NP_476625;, nucleotide= NM_057277;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004558 // alpha-glucosidase activity // infer
FlyMine data for FBgn0002569.
Homophila reports that CG8694 is a close match (3e-89) to human gene ATR1;D2H;NBAT;SLC3A1 (NP_000332), a gene associated with Cystinuria, 220100 (3);Homozygous 2p16 deletion syndrome, 606407 (3).
VDRC has 1 RNAi stocks for FBgn0002569 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye10 ± 14 of 4 0.06Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland55 ± 94 of 4 0.30Down
Crop6 ± 10 of 4 0.00Down
Midgut2611 ± 224 of 414.00Up
Tubule26 ± 123 of 4 0.10Down
Hindgut624 ± 164 of 4 3.30Up
Heart0 ± 00 of 4 0.00Down
Fat body3 ± 20 of 4 0.02Down
Ovary0 ± 00 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands3 ± 00 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.02Down
Mated spermatheca3 ± 10 of 4 0.02Down
Adult carcass7 ± 20 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut595 ± 104 of 4 3.19Up
Larval tubule6 ± 21 of 4 0.00Down
Larval hindgut118 ± 164 of 4 0.63None
Larval fat body5 ± 10 of 4 0.00Down
Larval trachea2 ± 10 of 4 0.01Down
Larval carcass2 ± 10 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly186 ± 284 of 4

Looking for FBgn0002569. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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