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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002571 through 18771 annotations produced 1 hits



maltase (LvpL):

Annotation Number : CG8695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002571
Gbrowse : chr2R:4343413-4345390 (-) // 100.0 //
Probeset : 1624509_at
Accessions : protein= NP_476628;, nucleotide= NM_057280;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004558 // alpha-glucosidase activity // infer
FlyMine data for FBgn0002571.
BDGP gene expression has embryonic in situ data for LvpL: 13 pix of staining in 2 body parts.
Homophila reports that CG8695 is a close match (4e-93) to human gene ATR1;D2H;NBAT;SLC3A1 (NP_000332), a gene associated with Cystinuria, 220100 (3);Homozygous 2p16 deletion syndrome, 606407 (3).
VDRC has 2 RNAi stocks for FBgn0002571 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland4 ± 20 of 4 0.04Down
Crop2 ± 00 of 4 0.00Down
Midgut1947 ± 404 of 416.60Up
Tubule6 ± 00 of 4 0.10Down
Hindgut36 ± 34 of 4 0.30None
Heart1 ± 00 of 4 0.01Down
Fat body1 ± 00 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca1 ± 10 of 4 0.02Down
Adult carcass4 ± 20 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut582 ± 1274 of 4 4.96Up
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut7 ± 00 of 4 0.06Down
Larval fat body4 ± 10 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.01Down
Larval carcass3 ± 10 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly117 ± 264 of 4

Looking for FBgn0002571. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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