Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002576 through 18771 annotations produced 1 hits



chrX:9178681-9197670 (+) // 100.0 // (lozenge):

Annotation Number : CG1689
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633299_at
Accessions : protein= , nucleotide= NP_001096919; /// NP_511099;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 00017
Interpro : DNA-dependent // inferred from electronic annotation /// 0006952 // defense response // non-traceable author statement
FlyMine data for full length.
Homophila reports that CG1689 is a close match (3e-46) to human gene AML1;CBFA2;RUNX1 (NP_001001890), a gene associated with Leukemia, acute myeloid, 601626 (3);Platelet disorder, familial, with associated myeloid malignancy, 601399 (3);{Rheumatoid arthritis, susceptibility to}, 180300 (3).
BioGrid reports that CG1689 interacts with CG3166 CG3166 CG1242 CG7959 CG7959 CG7959 CG7959 CG7960 CG9375 CG9375 CG10393 CG32491 CG7467 CG17170 CG17170 CG17170 CG17170 CG11049 CG11049 CG7803 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 13 of 4 1.40None
Head30 ± 04 of 4 4.00Up
Eye99 ± 44 of 413.16Up
Thoracicoabdominal ganglion7 ± 00 of 4 1.00None
Salivary gland10 ± 40 of 4 1.37None
Crop6 ± 01 of 4 0.80None
Midgut2 ± 00 of 4 0.30Down
Tubule3 ± 10 of 4 0.50Down
Hindgut5 ± 00 of 4 0.70Down
Heart11 ± 24 of 4 1.51None
Fat body13 ± 23 of 4 1.75Up
Ovary1 ± 00 of 4 0.20Down
Testis3 ± 11 of 4 0.40Down
Male accessory glands5 ± 10 of 4 0.70None
Virgin spermatheca17 ± 14 of 4 2.27Up
Mated spermatheca23 ± 24 of 4 3.06Up
Adult carcass10 ± 20 of 4 1.40None
Larval CNS10 ± 24 of 4 1.39None
Larval Salivary gland6 ± 11 of 4 0.86None
Larval midgut2 ± 00 of 4 0.36Down
Larval tubule4 ± 00 of 4 0.60Down
Larval hindgut7 ± 02 of 4 0.96None
Larval fat body4 ± 10 of 4 0.60None
Larval trachea6 ± 12 of 4 0.82None
Larval carcass15 ± 14 of 4 2.11Up
S2 cells (growing)25 ± 14 of 4 3.30Up
Whole fly7 ± 02 of 4

Looking for FBgn0002576. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime