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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002577 through 18771 annotations produced 1 hits



miniature (m):

Annotation Number : CG9369
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002577
Gbrowse : chrX:11648305-11663548 (+) // 100.0 //
Probeset : 1626235_at
Accessions : protein= NP_572747;, nucleotide= NM_132519;
Pathway : 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0016021 // integral to membrane // infer
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity
FlyMine data for FBgn0002577.
VDRC has 1 RNAi stocks for FBgn0002577 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.60None
Head5 ± 10 of 4 0.60None
Eye1 ± 00 of 4 0.19Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.50None
Salivary gland41 ± 42 of 4 5.05Up
Crop115 ± 104 of 414.10Up
Midgut2 ± 00 of 4 0.40Down
Tubule3 ± 10 of 4 0.40Down
Hindgut12 ± 22 of 4 1.50None
Heart6 ± 22 of 4 0.83None
Fat body21 ± 54 of 4 2.63Up
Ovary4 ± 00 of 4 0.60None
Testis5 ± 10 of 4 0.60None
Male accessory glands4 ± 10 of 4 0.50None
Virgin spermatheca5 ± 00 of 4 0.65None
Mated spermatheca6 ± 30 of 4 0.76None
Adult carcass12 ± 31 of 4 1.50None
Larval CNS6 ± 11 of 4 0.73None
Larval Salivary gland9 ± 11 of 4 1.14None
Larval midgut5 ± 00 of 4 0.70None
Larval tubule4 ± 11 of 4 0.60None
Larval hindgut8 ± 00 of 4 1.02None
Larval fat body4 ± 20 of 4 0.60None
Larval trachea12 ± 42 of 4 1.48None
Larval carcass20 ± 03 of 4 2.52Up
S2 cells (growing)3 ± 00 of 4 0.38Down
Whole fly8 ± 11 of 4

Looking for FBgn0002577. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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