FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0002609 through 18771 annotations produced 1 hits

split locus enhancer protein m3 (HLHm3):

Annotation Number : CG8346
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002609
Gbrowse : chr3R:21847436-21848858 (+) // 100.0 //
Probeset : 1623497_at
Accessions : protein= NP_524509;, nucleotide= NM_079785;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007219 // Notch signaling pathway // non-traceable author sta
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
FlyMine data for FBgn0002609.
BioGrid reports that CG8346 interacts with CG8384 .
TRiP has 1 RNAi stocks for FBgn0002609 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	20 ± 2	4 of 4	0.40	Down
Head	26 ± 1	4 of 4	0.50	Down
Eye	28 ± 1	4 of 4	0.55	Down
Thoracicoabdominal ganglion	22 ± 0	4 of 4	0.40	Down
Salivary gland	7 ± 2	0 of 4	0.15	Down
Crop	6 ± 1	2 of 4	0.10	Down
Midgut	163 ± 18	4 of 4	3.20	Up
Tubule	6 ± 0	0 of 4	0.10	Down
Hindgut	19 ± 4	3 of 4	0.40	Down
Heart	10 ± 0	4 of 4	0.20	Down
Fat body	7 ± 5	2 of 4	0.14	Down
Ovary	39 ± 1	4 of 4	0.80	None
Testis	5 ± 1	4 of 4	0.10	Down
Male accessory glands	5 ± 1	0 of 4	0.10	Down
Virgin spermatheca	5 ± 1	0 of 4	0.10	Down
Mated spermatheca	5 ± 0	0 of 4	0.10	Down
Adult carcass	14 ± 0	1 of 4	0.30	Down
Larval CNS	142 ± 2	4 of 4	2.75	Up
Larval Salivary gland	20 ± 2	4 of 4	0.40	Down
Larval midgut	60 ± 4	4 of 4	1.17	None
Larval tubule	1 ± 0	0 of 4	0.00	Down
Larval hindgut	21 ± 1	4 of 4	0.41	Down
Larval fat body	17 ± 1	3 of 4	0.30	Down
Larval trachea	343 ± 22	4 of 4	6.64	Up
Larval carcass	39 ± 5	4 of 4	0.76	None
S2 cells (growing)	2 ± 0	0 of 4	0.05	Down
Whole fly	51 ± 4	4 of 4

Looking for FBgn0002609. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720