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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002626 through 18771 annotations produced 1 hits



r-protein 49 (RpL32):

Annotation Number : CG7939
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002626
Gbrowse : chr3R:25870867-25871880 (-) // 100.0 //
Probeset : 1625337_s_at
Accessions : protein= NP_001138127; /// NP_001138128; /// NP_524582; /// NP_733339; /// NP_733340;, nucleotide= NM_001144655; /// NM_001144656; /// NM_079843; /// NM_170460; /// NM_170461;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statemen
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0002626.
BDGP gene expression has embryonic in situ data for RpL32: 8 pix of staining in 1 body parts.
BioGrid reports that CG7939 interacts with CG9089 CG8539 .
TRiP has 1 RNAi stocks for FBgn0002626 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002626 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2995 ± 654 of 4 0.80Down
Head4454 ± 1954 of 4 1.20None
Eye6384 ± 1464 of 4 1.66Up
Thoracicoabdominal ganglion4151 ± 1174 of 4 1.10None
Salivary gland11667 ± 4964 of 4 3.04Up
Crop6162 ± 3444 of 4 1.60Up
Midgut4902 ± 1654 of 4 1.30Up
Tubule2628 ± 424 of 4 0.70Down
Hindgut4871 ± 1384 of 4 1.30Up
Heart7279 ± 4914 of 4 1.90Up
Fat body5722 ± 6874 of 4 1.49Up
Ovary3298 ± 924 of 4 0.90Down
Testis1031 ± 334 of 4 0.30Down
Male accessory glands8599 ± 2874 of 4 2.20Up
Virgin spermatheca3194 ± 5354 of 4 0.83None
Mated spermatheca3462 ± 5104 of 4 0.90None
Adult carcass5720 ± 3054 of 4 1.50Up
Larval CNS2782 ± 2494 of 4 0.72Down
Larval Salivary gland7986 ± 4104 of 4 2.08Up
Larval midgut4208 ± 1324 of 4 1.10None
Larval tubule4894 ± 704 of 4 1.30Up
Larval hindgut4353 ± 264 of 4 1.13Up
Larval fat body7041 ± 7734 of 4 1.80Up
Larval trachea6384 ± 2564 of 4 1.66Up
Larval carcass4698 ± 3404 of 4 1.22None
S2 cells (growing)4532 ± 1564 of 4 1.18Up
Whole fly3839 ± 1514 of 4

Looking for FBgn0002626. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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