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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002631 through 18771 annotations produced 1 hits



E(spl) region transcript m5 (HLHm5):

Annotation Number : CG6096
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002631
Gbrowse : chr3R:21854571-21855457 (-) // 100.0 //
Probeset : 1639741_at
Accessions : protein= NP_524511;, nucleotide= NM_079787;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
FlyMine data for FBgn0002631.
BDGP gene expression has embryonic in situ data for HLHm5: 120 pix of staining in 18 body parts.
BioGrid reports that CG6096 interacts with CG7383 CG7659 CG8384 CG9573 .
TRiP has 1 RNAi stocks for FBgn0002631 available for purchase.
VDRC has 4 RNAi stocks for FBgn0002631 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30None
Head2 ± 00 of 4 0.70None
Eye1 ± 00 of 4 0.38None
Thoracicoabdominal ganglion1 ± 00 of 4 0.30None
Salivary gland4 ± 00 of 4 1.27None
Crop2 ± 00 of 4 0.60None
Midgut3 ± 10 of 4 1.00None
Tubule1 ± 00 of 4 0.30Down
Hindgut2 ± 10 of 4 0.70None
Heart0 ± 00 of 4 0.23None
Fat body1 ± 00 of 4 0.43None
Ovary0 ± 00 of 4 0.30None
Testis1 ± 00 of 4 0.30None
Male accessory glands1 ± 00 of 4 0.30None
Virgin spermatheca2 ± 00 of 4 0.63None
Mated spermatheca1 ± 00 of 4 0.33None
Adult carcass1 ± 00 of 4 0.40None
Larval CNS61 ± 84 of 417.83Up
Larval Salivary gland1 ± 00 of 4 0.41None
Larval midgut1 ± 00 of 4 0.40None
Larval tubule2 ± 00 of 4 0.70None
Larval hindgut2 ± 00 of 4 0.56None
Larval fat body1 ± 00 of 4 0.50None
Larval trachea1 ± 20 of 4 0.57None
Larval carcass1 ± 00 of 4 0.45None
S2 cells (growing)1 ± 00 of 4 0.38None
Whole fly3 ± 20 of 4

Looking for FBgn0002631. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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