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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002641 through 18771 annotations produced 1 hits



bronzy (mal):

Annotation Number : CG1692
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002641
Gbrowse : chrX:20300707-20304237 (+) // 100.0 //
Probeset : 1631688_at
Accessions : protein= NP_523423;, nucleotide= NM_078699;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008265 // Mo-molybdopterin cofactor sulfurase
FlyMine data for FBgn0002641.
BDGP gene expression has embryonic in situ data for mal: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0002641 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 14 of 4 0.40Down
Head76 34 of 4 0.60Down
Eye41 24 of 4 0.33Down
Thoracicoabdominal ganglion52 14 of 4 0.40Down
Salivary gland52 44 of 4 0.41Down
Crop165 24 of 4 1.30Up
Midgut317 144 of 4 2.50Up
Tubule324 64 of 4 2.60Up
Hindgut87 14 of 4 0.70Down
Heart47 14 of 4 0.38Down
Fat body79 114 of 4 0.63Down
Ovary238 34 of 4 1.90Up
Testis25 14 of 4 0.20Down
Male accessory glands123 84 of 4 1.00None
Virgin spermatheca160 84 of 4 1.28Up
Mated spermatheca172 84 of 4 1.37Up
Adult carcass87 34 of 4 0.70Down
Larval CNS93 24 of 4 0.74Down
Larval Salivary gland249 224 of 4 1.98Up
Larval midgut142 94 of 4 1.13None
Larval tubule134 64 of 4 1.10None
Larval hindgut72 24 of 4 0.57Down
Larval fat body75 54 of 4 0.60Down
Larval trachea62 24 of 4 0.49Down
Larval carcass105 74 of 4 0.84None
S2 cells (growing)113 14 of 4 0.90None
Whole fly126 54 of 4

Looking for FBgn0002641. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime