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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002643 through 18771 annotations produced 2 hits



Mastermind (mam):

Annotation Number : CG8118
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002643
Gbrowse : chr2R:9878685-9947861 (+) // 100.0 //
Probeset : 1632457_s_at
Accessions : protein= NP_525115; /// NP_725354; /// NP_995831;, nucleotide= NM_080376; /// NM_166030; /// NM_206109;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003713 // transcription coactivator activity // inferred from electronic annotation
FlyMine data for FBgn0002643.
BioGrid reports that CG8118 interacts with CG11579 CG11579 CG3619 CG3619 CG18361 CG3929 CG5460 CG5460 CG5460 CG5460 CG3839 CG15793 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG17704 CG18803 CG9375 CG9375 CG9375 CG9375 CG6127 CG6127 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3166 CG11387 CG11387 CG3929 CG9739 CG1560 CG2845 CG18085 CG2621 CG1903 CG1903 CG8573 CG4889 CG18001 .
TRiP has 1 RNAi stocks for FBgn0002643 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain406 84 of 415.50Up
Head100 84 of 4 3.80Up
Eye119 34 of 4 4.55Up
Thoracicoabdominal ganglion535 154 of 420.40Up
Salivary gland49 74 of 4 1.90Up
Crop63 44 of 4 2.40Up
Midgut20 24 of 4 0.80None
Tubule9 12 of 4 0.40Down
Hindgut36 14 of 4 1.40None
Heart30 34 of 4 1.17None
Fat body41 24 of 4 1.59Up
Ovary13 04 of 4 0.50Down
Testis9 14 of 4 0.40Down
Male accessory glands13 22 of 4 0.50Down
Virgin spermatheca59 64 of 4 2.27Up
Mated spermatheca52 24 of 4 2.01Up
Adult carcass40 24 of 4 1.50Up
Larval CNS456 334 of 417.44Up
Larval Salivary gland15 24 of 4 0.60None
Larval midgut14 14 of 4 0.56Down
Larval tubule33 14 of 4 1.30None
Larval hindgut30 34 of 4 1.17None
Larval fat body37 64 of 4 1.40None
Larval trachea62 44 of 4 2.38Up
Larval carcass53 54 of 4 2.03Up
S2 cells (growing)26 34 of 4 1.01None
Whole fly26 34 of 4



Mastermind (mam):

Annotation Number : HDC06312
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002643
Gbrowse : chr2R:9919037-9919305 (+) // 100.0 //
Probeset : 1624960_at
Accessions : protein= NP_525115; /// NP_725354; /// NP_995831;, nucleotide= NM_080376; /// NM_166030; /// NM_206109;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003713 // transcription coactivator activity // inferred from electronic annotation
FlyMine data for FBgn0002643.
TRiP has 1 RNAi stocks for FBgn0002643 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 24 of 4 1.30None
Head12 21 of 4 0.90None
Eye8 10 of 4 0.61Down
Thoracicoabdominal ganglion15 11 of 4 1.20None
Salivary gland42 30 of 4 3.15Up
Crop17 30 of 4 1.30None
Midgut20 32 of 4 1.50None
Tubule10 00 of 4 0.70Down
Hindgut16 11 of 4 1.30None
Heart10 04 of 4 0.82None
Fat body26 73 of 4 2.01Up
Ovary11 00 of 4 0.90None
Testis5 10 of 4 0.40Down
Male accessory glands24 30 of 4 1.80Up
Virgin spermatheca24 21 of 4 1.82Up
Mated spermatheca30 11 of 4 2.26Up
Adult carcass14 20 of 4 1.10None
Larval CNS15 22 of 4 1.15None
Larval Salivary gland18 20 of 4 1.39None
Larval midgut14 00 of 4 1.06None
Larval tubule15 11 of 4 1.20None
Larval hindgut16 22 of 4 1.25None
Larval fat body20 20 of 4 1.60Up
Larval trachea13 14 of 4 1.03None
Larval carcass10 10 of 4 0.76None
S2 cells (growing)17 22 of 4 1.29None
Whole fly13 10 of 4

Looking for FBgn0002643. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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