FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0002643 through 18771 annotations produced 2 hits

Mastermind (mam):

Annotation Number : HDC06312
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002643
Gbrowse : chr2R:9919037-9919305 (+) // 100.0 //
Probeset : 1624960_at
Accessions : protein= NP_525115; /// NP_725354; /// NP_995831;, nucleotide= NM_080376; /// NM_166030; /// NM_206109;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003713 // transcription coactivator activity // inferred from electronic annotation
FlyMine data for FBgn0002643.
TRiP has 1 RNAi stocks for FBgn0002643 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002643 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	17 ± 2	4 of 4	1.30	None
Head	12 ± 2	1 of 4	0.90	None
Eye	8 ± 1	0 of 4	0.61	Down
Thoracicoabdominal ganglion	15 ± 1	1 of 4	1.20	None
Salivary gland	42 ± 3	0 of 4	3.15	Up
Crop	17 ± 3	0 of 4	1.30	None
Midgut	20 ± 3	2 of 4	1.50	None
Tubule	10 ± 0	0 of 4	0.70	Down
Hindgut	16 ± 1	1 of 4	1.30	None
Heart	10 ± 0	4 of 4	0.82	None
Fat body	26 ± 7	3 of 4	2.01	Up
Ovary	11 ± 0	0 of 4	0.90	None
Testis	5 ± 1	0 of 4	0.40	Down
Male accessory glands	24 ± 3	0 of 4	1.80	Up
Virgin spermatheca	24 ± 2	1 of 4	1.82	Up
Mated spermatheca	30 ± 1	1 of 4	2.26	Up
Adult carcass	14 ± 2	0 of 4	1.10	None
Larval CNS	15 ± 2	2 of 4	1.15	None
Larval Salivary gland	18 ± 2	0 of 4	1.39	None
Larval midgut	14 ± 0	0 of 4	1.06	None
Larval tubule	15 ± 1	1 of 4	1.20	None
Larval hindgut	16 ± 2	2 of 4	1.25	None
Larval fat body	20 ± 2	0 of 4	1.60	Up
Larval trachea	13 ± 1	4 of 4	1.03	None
Larval carcass	10 ± 1	0 of 4	0.76	None
S2 cells (growing)	17 ± 2	2 of 4	1.29	None
Whole fly	13 ± 1	0 of 4

Mastermind (mam):

Annotation Number : CG8118
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002643
Gbrowse : chr2R:9878685-9947861 (+) // 100.0 //
Probeset : 1632457_s_at
Accessions : protein= NP_525115; /// NP_725354; /// NP_995831;, nucleotide= NM_080376; /// NM_166030; /// NM_206109;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003713 // transcription coactivator activity // inferred from electronic annotation
FlyMine data for FBgn0002643.
BioGrid reports that CG8118 interacts with CG11579 CG11579 CG3619 CG3619 CG18361 CG3929 CG5460 CG5460 CG5460 CG5460 CG3839 CG15793 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG17704 CG18803 CG9375 CG9375 CG9375 CG9375 CG6127 CG6127 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3166 CG11387 CG11387 CG3929 CG9739 CG1560 CG2845 CG18085 CG2621 CG1903 CG1903 CG8573 CG4889 CG18001 .
TRiP has 1 RNAi stocks for FBgn0002643 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002643 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	406 ± 8	4 of 4	15.50	Up
Head	100 ± 8	4 of 4	3.80	Up
Eye	119 ± 3	4 of 4	4.55	Up
Thoracicoabdominal ganglion	535 ± 15	4 of 4	20.40	Up
Salivary gland	49 ± 7	4 of 4	1.90	Up
Crop	63 ± 4	4 of 4	2.40	Up
Midgut	20 ± 2	4 of 4	0.80	None
Tubule	9 ± 1	2 of 4	0.40	Down
Hindgut	36 ± 1	4 of 4	1.40	None
Heart	30 ± 3	4 of 4	1.17	None
Fat body	41 ± 2	4 of 4	1.59	Up
Ovary	13 ± 0	4 of 4	0.50	Down
Testis	9 ± 1	4 of 4	0.40	Down
Male accessory glands	13 ± 2	2 of 4	0.50	Down
Virgin spermatheca	59 ± 6	4 of 4	2.27	Up
Mated spermatheca	52 ± 2	4 of 4	2.01	Up
Adult carcass	40 ± 2	4 of 4	1.50	Up
Larval CNS	456 ± 33	4 of 4	17.44	Up
Larval Salivary gland	15 ± 2	4 of 4	0.60	None
Larval midgut	14 ± 1	4 of 4	0.56	Down
Larval tubule	33 ± 1	4 of 4	1.30	None
Larval hindgut	30 ± 3	4 of 4	1.17	None
Larval fat body	37 ± 6	4 of 4	1.40	None
Larval trachea	62 ± 4	4 of 4	2.38	Up
Larval carcass	53 ± 5	4 of 4	2.03	Up
S2 cells (growing)	26 ± 3	4 of 4	1.01	None
Whole fly	26 ± 3	4 of 4

Looking for FBgn0002643. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720