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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0002715 through 18771 annotations produced 1 hits

meiotic from via Salaria 332 (mei-S332):

Annotation Number : CG5303
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002715
Gbrowse : chr2R:18009605-18012073 (+) // 100.0 //
Probeset : 1639029_at
Accessions : protein= NP_476634;, nucleotide= NM_057286;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from direct assay /// 0000775 // chromosome
FlyMine data for FBgn0002715.
BDGP gene expression has embryonic in situ data for mei-S332: 11 pix of staining in 6 body parts.
BioGrid reports that CG5303 interacts with CG5692 CG5882 CG5939 CG5973 CG6654 CG7386 CG9099 CG9239 CG9398 CG9968 .
TRiP has 1 RNAi stocks for FBgn0002715 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002715 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 14 of 4 0.20Down
Head11 04 of 4 0.10Down
Eye13 14 of 4 0.12Down
Thoracicoabdominal ganglion29 14 of 4 0.30Down
Salivary gland17 32 of 4 0.15Down
Crop21 14 of 4 0.20Down
Midgut17 14 of 4 0.20Down
Tubule9 02 of 4 0.10Down
Hindgut10 12 of 4 0.10Down
Heart8 22 of 4 0.08Down
Fat body7 12 of 4 0.07Down
Ovary211 24 of 4 1.90Up
Testis349 54 of 4 3.20Up
Male accessory glands6 21 of 4 0.10Down
Virgin spermatheca4 10 of 4 0.04Down
Mated spermatheca5 11 of 4 0.05Down
Adult carcass13 10 of 4 0.10Down
Larval CNS190 74 of 4 1.73Up
Larval Salivary gland10 22 of 4 0.09Down
Larval midgut13 21 of 4 0.13Down
Larval tubule20 34 of 4 0.20Down
Larval hindgut14 14 of 4 0.13Down
Larval fat body36 183 of 4 0.30Down
Larval trachea29 54 of 4 0.27Down
Larval carcass13 34 of 4 0.12Down
S2 cells (growing)46 14 of 4 0.42Down
Whole fly110 34 of 4

Looking for FBgn0002715. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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