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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0002716 through 18771 annotations produced 1 hits



meiotic W68 (mei-W68):

Annotation Number : CG30132
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002716
Gbrowse : chr2R:15343699-15347029 (+) // 100.0 //
Probeset : 1634534_at
Accessions : protein= NP_995901;, nucleotide= NM_206179;
Pathway : 0005694 // chromosome // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electro
FlyMine data for FBgn0002716.
VDRC has 1 RNAi stocks for FBgn0002716 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 1.10None
Head2 10 of 4 0.70None
Eye3 00 of 4 1.05None
Thoracicoabdominal ganglion3 10 of 4 0.80None
Salivary gland5 20 of 4 1.32None
Crop5 10 of 4 1.50None
Midgut5 10 of 4 1.40None
Tubule4 10 of 4 1.30None
Hindgut2 00 of 4 0.70None
Heart1 00 of 4 0.35None
Fat body6 40 of 4 1.77None
Ovary7 12 of 4 2.10Up
Testis7 11 of 4 2.00Up
Male accessory glands6 20 of 4 1.60None
Virgin spermatheca6 20 of 4 1.77None
Mated spermatheca3 10 of 4 1.03None
Adult carcass4 20 of 4 1.30None
Larval CNS3 00 of 4 0.79None
Larval Salivary gland2 10 of 4 0.58None
Larval midgut8 11 of 4 2.14Up
Larval tubule5 10 of 4 1.40None
Larval hindgut1 00 of 4 0.48None
Larval fat body8 00 of 4 2.20Up
Larval trachea0 00 of 4 0.13Down
Larval carcass2 00 of 4 0.68None
S2 cells (growing)4 00 of 4 1.25None
Whole fly3 00 of 4

Looking for FBgn0002716. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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